PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004501363.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family TALE
Protein Properties Length: 377aa    MW: 42714.5 Da    PI: 6.5092
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004501363.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.64.2e-083263592154
                     HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     k +yp++e++++L +++gL+ +q+ +WF N+R +
  XP_004501363.1 326 KWPYPTEEDKARLVQETGLELKQINNWFINQRKR 359
                     469*****************************87 PP
2ELK292.4e-10280301122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     ELKh+L+++Y+++++++++E++
  XP_004501363.1 280 ELKHELKQGYKEKIVDIREEIL 301
                     9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012554.3E-18107151IPR005540KNOX1
PfamPF037903.0E-16109149IPR005540KNOX1
SMARTSM012568.7E-26167222IPR005541KNOX2
PfamPF037911.3E-18173221IPR005541KNOX2
PROSITE profilePS512139.969280300IPR005539ELK domain
PfamPF037898.5E-7280301IPR005539ELK domain
SMARTSM011886.1E-4280301IPR005539ELK domain
PROSITE profilePS5007111.758300363IPR001356Homeobox domain
SMARTSM003896.2E-11302367IPR001356Homeobox domain
SuperFamilySSF466892.91E-16302366IPR009057Homeodomain-like
CDDcd000867.96E-12303364No hitNo description
Gene3DG3DSA:1.10.10.602.7E-25307364IPR009057Homeodomain-like
PfamPF059201.1E-17320359IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MSYHNHHPLH HFTHSATQPT SDPHHSFQTA PNWLNNALLR NLDSSNTNVN STNFLNLDTA  60
ASQSSNHWLS HPILHRNNSE VIDDIAGVKV AETGEAAAEG VMKWQNAKYK GEIMAHPLYE  120
QLLSAHVACL RIATPVDQLP KIDDELAQSQ NVVAKYSAFG QDSQGQGILD HDNKQQLDHF  180
MSHYVLLLCS FKEQLQQHVR VHAMEAVMAC WEIEQSLQSL TGVSPGEGTG ATMSEDEDEQ  240
VDSDVNQFDT GGLDGSDSMG FGPLVPTENE RSLMDRVRHE LKHELKQGYK EKIVDIREEI  300
LRKRRAGKLP GDTTSVLKAW WQSHSKWPYP TEEDKARLVQ ETGLELKQIN NWFINQRKRN  360
WHSNPSTSNV LKSKRKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A3e-12303367872Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1356376RKRNWHSNPSTSNVLKSKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004501363.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027190969.10.0homeobox protein knotted-1-like 3 isoform X1
SwissprotO041360.0KNAP3_MALDO; Homeobox protein knotted-1-like 3
TrEMBLA0A3Q7XBK90.0A0A3Q7XBK9_CICAR; homeobox protein knotted-1-like 3 isoform X1
STRINGXP_004501362.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.21e-165KNOTTED1-like homeobox gene 3