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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
XP_004501120.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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| Family |
SRS |
| Protein Properties |
Length: 201aa MW: 22149 Da PI: 8.243 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_004501120.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 173.6 | 9.8e-54 | 15 | 144 | 18 | 153 |
DUF702 18 dCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkeletsslPeevsse 112
+C h RCRtCCksrgf+C+thvkstWvpaakrrerq++l+a+++ + + +++kr+r++ +++ + +l+ + + le+ ++P+evss+
XP_004501120.1 15 ECIHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQHHLSALQQFRG---DGDNPKRHRDN---HAAPSLIPSLPPPIPATGLEVGQFPAEVSSS 103
8*************************************999976654...57888888885...55666677888899999************** PP
DUF702 113 avfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
vfrcvrv+s+d +e++aYqtav+igGhvfkGiLydqG+
XP_004501120.1 104 VVFRCVRVRSLDGPDEQCAYQTAVNIGGHVFKGILYDQGPP 144
***************************************85 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 201 aa
Download sequence Send
to blast |
MDKDTCMSEL GMVSECIHLR CRTCCKSRGF QCQTHVKSTW VPAAKRRERQ HHLSALQQFR 60
GDGDNPKRHR DNHAAPSLIP SLPPPIPATG LEVGQFPAEV SSSVVFRCVR VRSLDGPDEQ 120
CAYQTAVNIG GHVFKGILYD QGPPSSTTAP IDHHGSSSEP RHQLHFLTAP IATTGNPFDP 180
SIYSAPLNAP FMPRSTQFFH P
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269|PubMed:10368174, ECO:0000269|PubMed:11706176, ECO:0000269|PubMed:16740146}. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT3G51060.1 | 3e-39 | Lateral root primordium (LRP) protein-related |
| Publications
? help Back to Top |
- Islam MA, et al.
Overexpression of the AtSHI gene in poinsettia, Euphorbia pulcherrima, results in compact plants.
PLoS ONE, 2013. 8(1): p. e53377
[PMID:23308204] - Pfannebecker KC,Lange M,Rupp O,Becker A
An Evolutionary Framework for Carpel Developmental Control Genes.
Mol. Biol. Evol., 2017. 34(2): p. 330-348
[PMID:28049761] - Estornell LH,Landberg K,Cierlik I,Sundberg E
SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
Front Plant Sci, 2018. 9: p. 150
[PMID:29491878]
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