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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004501011.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | MYB_related | ||||||||
Protein Properties | Length: 95aa MW: 10949.5 Da PI: 9.4344 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.5 | 1.7e-09 | 5 | 52 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 +WT+ +++ +a + l ++ +W + ar +g g++ ++++ ++ k+ XP_004501011.1 5 SNWTPKQNKRFENALAILDKDipdRWQKLARAVG-GKSVEEVIRHYEKL 52 58********************************.***********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 10.019 | 2 | 57 | IPR017884 | SANT domain |
SMART | SM00717 | 1.9E-5 | 3 | 55 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.22E-11 | 5 | 60 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.09E-6 | 6 | 53 | No hit | No description |
Pfam | PF00249 | 1.6E-6 | 6 | 52 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 95 aa Download sequence Send to blast |
MASSSNWTPK QNKRFENALA ILDKDIPDRW QKLARAVGGK SVEEVIRHYE KLVEDVKLIE 60 EGLVPLPNYR NNVGSNKGYT YIMDEDKRMK ALSLQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 3e-26 | 2 | 95 | 6 | 93 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004501011.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004501011.1 | 5e-65 | protein RADIALIS-like 4 | ||||
Swissprot | F4JVB8 | 6e-30 | RADL1_ARATH; Protein RADIALIS-like 1 | ||||
TrEMBL | A0A1S2Y8F5 | 1e-63 | A0A1S2Y8F5_CICAR; protein RADIALIS-like 4 | ||||
STRING | XP_004501011.1 | 2e-64 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF154 | 34 | 280 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39250.1 | 2e-32 | RAD-like 1 |
Publications ? help Back to Top | |||
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