PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_004500978.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
|
||||||||
Family | TALE | ||||||||
Protein Properties | Length: 587aa MW: 66325.4 Da PI: 6.1829 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.9 | 9.7e-10 | 366 | 403 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe n+yp+ +e+ LA+++gLt +qV +WF N R + XP_004500978.1 366 FEHflNPYPKDSEKIMLARQTGLTRNQVANWFINARVR 403 665569******************************88 PP | |||||||
2 | BELL | 119.3 | 1.7e-38 | 237 | 308 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erq+l kk+kLls+l+eVdkrY+qy++ +qtv+ss ++vag+g+a+pYtslAl++iSrhFrcL+dai++qi XP_004500978.1 237 ERQNLLDKKTKLLSMLDEVDKRYRQYCHHMQTVVSSLDMVAGCGAAEPYTSLALRTISRHFRCLRDAISSQI 308 6899999****************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 2.5E-55 | 156 | 306 | IPR006563 | POX domain |
Pfam | PF07526 | 6.9E-48 | 163 | 305 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.779 | 344 | 407 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.22E-12 | 347 | 408 | No hit | No description |
SMART | SM00389 | 1.5E-9 | 347 | 411 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.14E-17 | 348 | 413 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.5E-27 | 350 | 412 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.6E-17 | 364 | 403 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 587 aa Download sequence Send to blast |
MYPNQAFSSG SYADMYTVTP LLPHNCYNES LGEQNEAITT MQSIDEHSNA CNSHVDSDQN 60 IHQCHGLSLS LGTLLPSTAS VSPFQYQYHD TGFVTLMNAC LPNLNGTSTT LSRDDDDNMH 120 KELESAECMP TFHHEITKRE GFRTLHPSDQ CFQGSQGFSN IFLNSQYLKA TQELLDEIVN 180 VRKALKQHGM EKQEKTSDIG LDNSKDADGK ETSHSMQMSS GPNGDNSNSC CELSPAERQN 240 LLDKKTKLLS MLDEVDKRYR QYCHHMQTVV SSLDMVAGCG AAEPYTSLAL RTISRHFRCL 300 RDAISSQIQV IQRNLGEQEG IPRLRYVDQH LRQQKALQHL GVMRQAWRPQ RGLPENSVSI 360 LRAWLFEHFL NPYPKDSEKI MLARQTGLTR NQVANWFINA RVRLWKPMVE EIYKEEFSDS 420 KRDCVQEFDN NNKSEESHEN NVITSDNNTN IQAGQFHGLK SEQTSCTTEQ YGEKRMQGNQ 480 RLSAKNGFYS SSGGTQIASD SATYELSELG NFSSVGGHHH VSLALELRNC ESDVLAISDD 540 AIQKRHNNHN QTLASSSDSD LLDYHFTDSG KQQHRFGNTH LLHEFVV |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrm_A | 4e-15 | 353 | 411 | 5 | 63 | Homeobox protein Meis2 |
4xrm_B | 4e-15 | 353 | 411 | 5 | 63 | Homeobox protein Meis2 |
4xrs_A | 4e-15 | 353 | 410 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 4e-15 | 353 | 410 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:16513846}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_004500978.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004500978.1 | 0.0 | BEL1-like homeodomain protein 7 | ||||
Refseq | XP_027190750.1 | 0.0 | BEL1-like homeodomain protein 7 | ||||
Swissprot | Q9FWS9 | 1e-115 | BLH3_ARATH; BEL1-like homeodomain protein 3 | ||||
TrEMBL | A0A1S2Y8D1 | 0.0 | A0A1S2Y8D1_CICAR; BEL1-like homeodomain protein 7 | ||||
STRING | XP_004500978.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2146 | 31 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G75410.2 | 1e-111 | BEL1-like homeodomain 3 |
Publications ? help Back to Top | |||
---|---|---|---|
|