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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004500809.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | MYB_related | ||||||||
Protein Properties | Length: 81aa MW: 9355.7 Da PI: 9.5098 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.2 | 3.9e-08 | 15 | 58 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 WT+ +l+ +a +++ ++ +W +a+ +g ++ +++k ++ XP_004500809.1 15 TWTPKQNKLFEKALAKYDKDtpdRWINVAKAVG-EKSVEEVKRHY 58 7********************************.9*********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 9.919 | 11 | 66 | IPR017884 | SANT domain |
SMART | SM00717 | 6.7E-6 | 12 | 64 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 8.97E-13 | 14 | 70 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.1E-5 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.03E-5 | 15 | 62 | No hit | No description |
Pfam | PF00249 | 1.8E-6 | 15 | 58 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 81 aa Download sequence Send to blast |
MASNSLSKHK LCDSTWTPKQ NKLFEKALAK YDKDTPDRWI NVAKAVGEKS VEEVKRHYEI 60 LLEDLKHIES GRVPIPNYKS T |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 6e-30 | 16 | 81 | 11 | 76 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004500809.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU468264 | 3e-80 | CU468264.8 M.truncatula DNA sequence from clone MTH2-46F7 on chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027190333.1 | 2e-54 | protein RADIALIS-like 6 | ||||
Swissprot | Q1A173 | 3e-34 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | A0A3Q7XRQ7 | 5e-53 | A0A3Q7XRQ7_CICAR; protein RADIALIS-like 6 | ||||
STRING | XP_004500809.1 | 9e-54 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF154 | 34 | 280 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.2 | 1e-36 | RAD-like 6 |