PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004500573.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family LBD
Protein Properties Length: 126aa    MW: 14204.3 Da    PI: 6.6486
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004500573.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260141.13.6e-4481071100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +Ca+Ck+lrr+C+kdC++apyfp+++p+kfa+vhk+FGasnv+k+l++lp ++reda+sslvyeA+ar+rdPvyG+vg i+ lq+q+++l+ +la
  XP_004500573.1   8 PCASCKLLRRRCTKDCIFAPYFPSHDPHKFAIVHKVFGASNVSKMLQELPCDQREDAVSSLVYEAHARMRDPVYGCVGAISYLQNQVSELQMQLA 102
                     7********************************************************************************************** PP

          DUF260  96 llkee 100
                     ++++e
  XP_004500573.1 103 VAQAE 107
                     99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.8147108IPR004883Lateral organ boundaries, LOB
PfamPF031956.6E-448105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MGGNTNSPCA SCKLLRRRCT KDCIFAPYFP SHDPHKFAIV HKVFGASNVS KMLQELPCDQ  60
REDAVSSLVY EAHARMRDPV YGCVGAISYL QNQVSELQMQ LAVAQAEMLC IQMEHEYDSL  120
SRETIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A8e-4841097112LOB family transfactor Ramosa2.1
5ly0_B8e-4841097112LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004500573.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR3786625e-49CR378662.1 M.truncatula DNA sequence from clone MTH2-41N19 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004500573.11e-91LOB domain-containing protein 12-like
SwissprotQ8LBW39e-70LBD12_ARATH; LOB domain-containing protein 12
TrEMBLA0A1S2Y8L63e-90A0A1S2Y8L6_CICAR; LOB domain-containing protein 12-like
STRINGXP_004500573.15e-91(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16643497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.14e-72LBD family protein
Publications ? help Back to Top
  1. Penfield S, et al.
    Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1.
    Plant Cell, 2004. 16(10): p. 2705-18
    [PMID:15367715]