PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004500506.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | LBD | ||||||||
Protein Properties | Length: 199aa MW: 22231.4 Da PI: 8.1593 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 126.6 | 1.2e-39 | 24 | 123 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+l+r+C+++C++apyf +++ kkfa vhk+FGasnv+k+l ++pe++red+++sl+yeAear+rdPvyG++g i lq+++++l+++la XP_004500506.1 24 SCAACKLLKRRCTPNCIFAPYFHSNECKKFAKVHKVFGASNVSKILIEVPEKQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMMELQHDLA 118 6*********************************************************************************************9 PP DUF260 96 llkee 100 +k++ XP_004500506.1 119 IAKDR 123 99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.303 | 23 | 124 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.3E-39 | 24 | 121 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MIEQHNRKSE MKGMKGYEPR SSSSCAACKL LKRRCTPNCI FAPYFHSNEC KKFAKVHKVF 60 GASNVSKILI EVPEKQREDT VNSLAYEAEA RLRDPVYGCI GAIALLQRKM MELQHDLAIA 120 KDRLARCHAA AVASAAAATT TFSVDTLHSH VTLPPFPDFS PSNDIFCHNN SSSQFYTRDE 180 TVDDFNQIPC LFSSFGSLF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-44 | 19 | 126 | 6 | 113 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-44 | 19 | 126 | 6 | 113 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004500506.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CR378661 | 1e-126 | CR378661.1 M.truncatula DNA sequence from clone XX-10B15, complete sequence. | |||
GenBank | CR937029 | 1e-126 | CR937029.1 M.truncatula DNA sequence from clone MTH2-105B15 on chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004500506.1 | 1e-148 | LOB domain-containing protein 21-like | ||||
Swissprot | Q9SRL8 | 9e-64 | LBD21_ARATH; LOB domain-containing protein 21 | ||||
TrEMBL | A0A1S2Y8W7 | 1e-147 | A0A1S2Y8W7_CICAR; LOB domain-containing protein 21-like | ||||
STRING | XP_004500506.1 | 1e-148 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5944 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11090.1 | 2e-64 | LOB domain-containing protein 21 |
Publications ? help Back to Top | |||
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