PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004500492.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family NF-X1
Protein Properties Length: 868aa    MW: 97061.6 Da    PI: 8.3682
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004500492.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X117.11.2e-05236254119
        zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                     CG HkC ++CH+  CppC+
  XP_004500492.1 236 CGVHKCVEICHRVSCPPCR 254
                     ******************8 PP
2zf-NF-X117.11.2e-05396415120
        zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                     CG+H+C++ C+ G+CppC++
  XP_004500492.1 396 CGRHPCKRRCCDGDCPPCSE 415
                     ******************85 PP
3zf-NF-X1217.3e-07417441119
        zf-NF-X1   1 CG......kHkCqklCHeGpCppCp 19 
                     CG      +HkCq++CH+G C pCp
  XP_004500492.1 417 CGrrlrcrNHKCQSPCHRGACAPCP 441
                     777777779***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS01359071137IPR019786Zinc finger, PHD-type, conserved site
CDDcd060085.19E-6172220No hitNo description
SMARTSM004380.02184202IPR000967Zinc finger, NF-X1-type
PfamPF014220.07184201IPR000967Zinc finger, NF-X1-type
SMARTSM00438190210232IPR000967Zinc finger, NF-X1-type
CDDcd060082.45E-8226274No hitNo description
SMARTSM004380.0028236255IPR000967Zinc finger, NF-X1-type
PfamPF014220.0058236254IPR000967Zinc finger, NF-X1-type
CDDcd060081.40E-9279326No hitNo description
SMARTSM004380.0028289308IPR000967Zinc finger, NF-X1-type
PfamPF014220.031289307IPR000967Zinc finger, NF-X1-type
CDDcd060086.47E-8333382No hitNo description
SMARTSM004380.57343363IPR000967Zinc finger, NF-X1-type
PfamPF014220.017343362IPR000967Zinc finger, NF-X1-type
CDDcd060081.94E-7386434No hitNo description
SMARTSM004380.011396415IPR000967Zinc finger, NF-X1-type
PfamPF014220.002396414IPR000967Zinc finger, NF-X1-type
CDDcd060082.06E-10413461No hitNo description
PfamPF014227.1E-4417441IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0012423442IPR000967Zinc finger, NF-X1-type
SMARTSM0043841486501IPR000967Zinc finger, NF-X1-type
PfamPF014224.7490500IPR000967Zinc finger, NF-X1-type
SMARTSM0043889509554IPR000967Zinc finger, NF-X1-type
PfamPF0142233509518IPR000967Zinc finger, NF-X1-type
SMARTSM004383.8591623IPR000967Zinc finger, NF-X1-type
PfamPF014220.15591601IPR000967Zinc finger, NF-X1-type
CDDcd060081.82E-4621662No hitNo description
SMARTSM004380.093633651IPR000967Zinc finger, NF-X1-type
PfamPF014220.53634650IPR000967Zinc finger, NF-X1-type
SMARTSM004386.7696717IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 868 aa     Download sequence    Send to blast
MASSNYIPPL SDSDSDGGSS TSELLRHSDL SESIFKSYFN FSGHSSINAT SADLSKIRSF  60
LTSSSSGALS CLICLERIKP SDPTWSCTSL CFAVFHLFCI QSWSRQASDL AASRAVTRLS  120
ISQDQASNTA LWNCPKCRFE YPKSLIPKTY LCFCGKLENP PSDDPWVLPH SCGDVCGRSL  180
KNNCGHHCLL LCHPGPCPSC PQLVKARCFC GSHHDVRRCG FKEFSCEAPC SKLLDCGVHK  240
CVEICHRVSC PPCRARGVYR CQCGKVKEEK ECCDRVFQCG EPCEKKLSCG KHVCEKGCHF  300
GECGACPLQG KRTCPCGKRV YEGMPCDAPL QVCGATCEKT LPCGYHRCHE RCHRGQCIET  360
CRIVVKKCCR CGSLKKDVPC YQDLTCERKC QTMRDCGRHP CKRRCCDGDC PPCSEICGRR  420
LRCRNHKCQS PCHRGACAPC PIMVTISCAC GETHFEVPCG TEMDQKPPKC PKRCPIKPLC  480
RHALICKPHK CHYGACPPCR LPCAEEYHCG HTCKLRCHGA RPPPNPEFTL KPKKKKFIQQ  540
SESVPGTPCP PCPELEWRSC VGQHIGAEQM MVCSNKSQFS CENLCGNPLP CGNHYCTKTC  600
HALENRSSTN QLTRSEACED CSLSCQKERK PACQHHCPRR CHPGDCPPCK VLIKRSCHCG  660
AMVHVFECIY YNSLSAKDQE TARSCGGPCH RKMPNCTHLC PETCHPGPCP NPEKCSKKVT  720
VRCKCQTLKK EWLCQDVQAE YNRSDCQPSD IPKNQFGVGL IPCNSDCKSK VQVVESELQL  780
RKSRVTVVKE PDNEKSGPKR RKRKERVVES KEPTVLQKII SRTKQFLLFV FFLVILVAAT  840
YYGYKGLLQL NDWMNKVDEQ RHKSSRIR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1799804RRKRKE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004500492.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1407340.0BT140734.1 Medicago truncatula clone JCVI-FLMt-22I2 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004500492.10.0NF-X1-type zinc finger protein NFXL2
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLA0A1S2Y8E70.0A0A1S2Y8E7_CICAR; NF-X1-type zinc finger protein NFXL2
STRINGXP_004500492.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102253237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors