PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004500442.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family LBD
Protein Properties Length: 177aa    MW: 19877.6 Da    PI: 5.6634
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004500442.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260141.52.6e-4461051100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +Ca+Ck+lrr+Ca++C++apyfp+e+p+kfa+vhk+FGasnv+k+l++lp ++r++a++slvyeA+ar+rdPvyG+vg i+ lq+q+ ql+ +la
  XP_004500442.1   6 PCASCKLLRRRCAQECIFAPYFPSEDPRKFAIVHKVFGASNVSKMLQELPIHQRSEAVNSLVYEANARVRDPVYGCVGAISYLQNQVTQLQMQLA 100
                     7********************************************************************************************** PP

          DUF260  96 llkee 100
                     ++++e
  XP_004500442.1 101 VAQAE 105
                     *9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089127.1065106IPR004883Lateral organ boundaries, LOB
PfamPF031952.3E-436103IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MGGSSPCASC KLLRRRCAQE CIFAPYFPSE DPRKFAIVHK VFGASNVSKM LQELPIHQRS  60
EAVNSLVYEA NARVRDPVYG CVGAISYLQN QVTQLQMQLA VAQAEILCIQ MQQDPVSVTS  120
SLPTYVDQDD KLMLLSENSN CYEPHLLPQY PNFPSSSSSS SNVFQDYEPL KRESFWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-4821187126LOB family transfactor Ramosa2.1
5ly0_B2e-4821187126LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004500442.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU6515811e-108CU651581.9 M.truncatula DNA sequence from clone MTH2-66L10 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004500442.11e-130LOB domain-containing protein 12
SwissprotQ8LBW31e-75LBD12_ARATH; LOB domain-containing protein 12
TrEMBLA0A1S2Y7411e-128A0A1S2Y741_CICAR; LOB domain-containing protein 12
STRINGXP_004500442.11e-129(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16643497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.12e-76LBD family protein
Publications ? help Back to Top
  1. Penfield S, et al.
    Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1.
    Plant Cell, 2004. 16(10): p. 2705-18
    [PMID:15367715]