PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004499679.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family WRKY
Protein Properties Length: 724aa    MW: 78621.1 Da    PI: 6.5349
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004499679.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.42.7e-32287344260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     +DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers+ +++++ei+Y+g Hnh+k
  XP_004499679.1 287 EDGYNWRKYGQKQVKGSEYPRSYYKCTHTNCPVKKKVERSH-EGHITEIIYKGAHNHPK 344
                     7****************************************.***************85 PP
2WRKY102.81.9e-32503561159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vkg+++prsYY+Ct agC+v+k+ver+++d k v++tYeg+Hnh+
  XP_004499679.1 503 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNAGCTVRKHVERASHDLKSVITTYEGKHNHD 561
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.4E-29284345IPR003657WRKY domain
SuperFamilySSF1182908.76E-26284345IPR003657WRKY domain
SMARTSM007743.1E-36286344IPR003657WRKY domain
PfamPF031063.5E-25287343IPR003657WRKY domain
PROSITE profilePS5081123.433287345IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.2E-37488563IPR003657WRKY domain
SuperFamilySSF1182901.96E-28495563IPR003657WRKY domain
PROSITE profilePS5081138.32498563IPR003657WRKY domain
SMARTSM007741.9E-37503562IPR003657WRKY domain
PfamPF031067.4E-25504561IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009942Biological Processlongitudinal axis specification
GO:0030010Biological Processestablishment of cell polarity
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 724 aa     Download sequence    Send to blast
MAGIDDNVTL NVDWGLPCPS PRSLFSRMLD GDNGSGGTGA QDGDSGAQLS DTSYPTEHKS  60
SSRGGLVERI AARAGFNAPR LNTESIRSTD LSLNSEIQSP YLTIPPGLSP TTLLDSPVFL  120
ANSLAQPSPT TGKFPFVSSV NVPEKSKDNC FTDIYASSFA FKPTSDLGPS FYNSAGRKIN  180
STALPHQSLH GIEASVHSEN SFQPQRIDAV KVQAENKSSF HLQANFSDSQ PQKDNGIKMF  240
SPDQRAFDTV GGSVEHATPM EEQADEEGEQ RVNGDSLVAG VGGTPSEDGY NWRKYGQKQV  300
KGSEYPRSYY KCTHTNCPVK KKVERSHEGH ITEIIYKGAH NHPKPAPSRR SGMGSANPHA  360
DMQVDNHEHV EPQSGGEGDL GWANAQKGNI AGVGNWKHDN LEVTSSATVI PEYGNQSNNL  420
QTQNGTHIDS GDAVDGSSTF SNEEEEDDQG THGSVSLGYD AEGDESESKR RKLESYATEM  480
SGATRAIREP RVVVQTTSEV DILDDGYRWR KYGQKVVKGN PNPRSYYKCT NAGCTVRKHV  540
ERASHDLKSV ITTYEGKHNH DVPAARSSSH VNANASNTAS GQASGLLQSH IHRPESSQVH  600
NGMGRPSLAS FNLPGRQQLG HPHGFSFGMN QPINLSNLAM SGMGPSAQSK LPGMLMNPFM  660
AQQQQHQQQQ QQQQHQHQQR AGNEMGFVLP KGEPNVDERG LNMHNGSSSM YQEIMNHMPL  720
GPHM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-36287564878Probable WRKY transcription factor 4
2lex_A1e-36287564878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00071PBMTransfer from AT5G56270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004499679.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1422270.0BT142227.1 Medicago truncatula clone JCVI-FLMt-22I14 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004499679.10.0probable WRKY transcription factor 2 isoform X2
SwissprotQ9FG771e-179WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLA0A1S2Y5I80.0A0A1S2Y5I8_CICAR; probable WRKY transcription factor 2 isoform X2
STRINGXP_004499679.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-179WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  4. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]