PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

M-type_MADS

Protein Properties

Length: 291aa MW: 33112.1 Da PI: 5.7987

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004499496.2	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	46.2	5.9e-15	65	104	6	45
HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 +s+r tf kR+ng++KK +E+S+LC++e++ ii+ ++++ XP_004499496.2 65 HSKRRETFKKRKNGLIKKVSEISTLCGIEACAIIYDKNNT 104 688999*****************************98875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	16.049	52	103	IPR002100	Transcription factor, MADS-box
SMART	SM00432	9.5E-19	52	111	IPR002100	Transcription factor, MADS-box
CDD	cd00266	1.75E-28	53	136	No hit	No description
PRINTS	PR00404	1.3E-8	54	74	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.44E-23	54	145	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.5E-14	62	103	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.3E-8	74	89	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.3E-8	89	110	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MVLMCLQQSG IVRLCGDDLA CRTKMLVCLQ QSGIVRFCGE DLADRVKINT NMARKKVKLA 60 YITCHSKRRE TFKKRKNGLI KKVSEISTLC GIEACAIIYD KNNTQVEVWP SESEIKSVLS 120 RFMSFPEMER SKKMLDQEGF LRQTIAKVYE QLKKQIEETR KKEMTNLIGQ YIHTGEFNGY 180 LMSKNDLNDF SSFIDESLKT IEQKMSQMAI IGEEDIGNGV QSMNAIEGQE NIGHALLRLV 240 SGGEDQQENM GHVAQGLETN ICEDLQINYG QWPMDFPMLP FSYDSVDPNG F

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	53	75	RKKVKLAYITCHSKRRETFKKRK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269\|PubMed:16798889, ECO:0000305\|PubMed:26462908}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004499496.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027190082.1	1e-179	agamous-like MADS-box protein AGL80
Swissprot	Q9FJK3	4e-37	AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBL	A0A3Q7YAY2	1e-178	A0A3Q7YAY2_CICAR; agamous-like MADS-box protein AGL80
STRING	XP_004499496.1	1e-179	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF16291	3	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48670.1	1e-39	AGAMOUS-like 80

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]