PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004499445.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 324aa    MW: 36985.7 Da    PI: 8.3016
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004499445.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.98.5e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +lv +++++G+g+W+++ +  g+ R+ k+c++rw +yl
   XP_004499445.1 14 KGPWTPEEDIILVSYIQEHGPGNWSSVTSNTGLMRCSKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding48.61.8e-1567112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T  E++ ++++ ++lG++ W++Ia++++  Rt++++k++w+++l
   XP_004499445.1  67 RGSFTDHEEKMIINLQQLLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112
                      899*******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-24564IPR009057Homeodomain-like
PROSITE profilePS5129424.502965IPR017930Myb domain
SuperFamilySSF466891.96E-3011108IPR009057Homeodomain-like
SMARTSM007172.5E-131363IPR001005SANT/Myb domain
PfamPF002491.7E-151461IPR001005SANT/Myb domain
CDDcd001677.74E-111661No hitNo description
Gene3DG3DSA:1.10.10.606.9E-2565117IPR009057Homeodomain-like
SMARTSM007175.1E-1566114IPR001005SANT/Myb domain
PROSITE profilePS5129418.58366116IPR017930Myb domain
PfamPF002497.4E-1467112IPR001005SANT/Myb domain
CDDcd001673.50E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MKRSPCCDKI RIKKGPWTPE EDIILVSYIQ EHGPGNWSSV TSNTGLMRCS KSCRLRWTNY  60
LRPGIKRGSF TDHEEKMIIN LQQLLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKLKKIQ  120
TSSNNEKEGI TIPIVKGQWE RRLQTDIHMA KQALCEALSI DKSTNIILPE KNNIMSYNNY  180
ATNPTTLNQT SSYASNTENI ARLLEKWMKK PQNSAYTINS GNSFSNMVTT TGSSSSECTQ  240
KDYAFGSMLS FKHSYNSDCS QSLSVDENNN LTMDYCLFQD ESKPKQVTQA PLTFLEKWLF  300
DDGAVQCNED LMNMSLEENT SGLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-271211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00235DAPTransfer from AT1G74650Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004499445.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004499445.10.0myb-related protein 306
SwissprotP813921e-112MYB06_ANTMA; Myb-related protein 306
TrEMBLA0A1S2Y6860.0A0A1S2Y686_CICAR; myb-related protein 306
STRINGXP_004499445.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101634115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74650.11e-106myb domain protein 31
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]