PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004499353.2
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family NAC
Protein Properties Length: 426aa    MW: 48370.7 Da    PI: 6.0542
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004499353.2genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.18.5e-50571822128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                     +pGfrFhPt+eelv +yL++kvegk++++ e i+ +d+y+++Pw+Lp+ ++ +ekewyf+++rd+ky++g+r+nr+t+sgyWkatg d+ + +++
  XP_004499353.2  57 MPGFRFHPTEEELVEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPALAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRTEN 150
                     79***************************.89***************8778899***************************************** PP

             NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                      + +glkktLvfy+g+apkg +t+W+m+eyrl
  XP_004499353.2 151 FRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRL 182
                     ******************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-5556202IPR003441NAC domain
PROSITE profilePS5100555.85856203IPR003441NAC domain
PfamPF023654.5E-2558182IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MAIAAATTST SVSMSMSMSQ SHSHEDITSN ENNNNNKHVV DEDEDDDDDD HEHDVVMPGF  60
RFHPTEEELV EFYLRRKVEG KRFNVELITF LDLYRYDPWE LPALAAIGEK EWYFYVPRDR  120
KYRNGDRPNR VTTSGYWKAT GADRMIRTEN FRSIGLKKTL VFYSGKAPKG IRTSWIMNEY  180
RLPQHETERY QKGEISLCRV YKRAGVEDHP SLPRCLPITR GNHSDHKNKQ NEILGMGFVG  240
GQSNKAAATP TPTATASINN KMHEGSCSVG NSNSDHVTTV LGLSKYSTDP NYRAAEEEEE  300
ERLMMMQQQQ VQYSAGGNST LLLPLPAACF PLQNSAVSSN SSMMDDLNRL VSFNNNNQHH  360
YCYNPNPNPN PNHLSTLLMQ PATLNSSVLP ITPIPTNFSD RLWDWNPIPE DHPNPSFNTS  420
LLEHDK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-555820319165NO APICAL MERISTEM PROTEIN
1ut4_B5e-555820319165NO APICAL MERISTEM PROTEIN
1ut7_A5e-555820319165NO APICAL MERISTEM PROTEIN
1ut7_B5e-555820319165NO APICAL MERISTEM PROTEIN
3swm_A7e-555820322168NAC domain-containing protein 19
3swm_B7e-555820322168NAC domain-containing protein 19
3swm_C7e-555820322168NAC domain-containing protein 19
3swm_D7e-555820322168NAC domain-containing protein 19
3swp_A7e-555820322168NAC domain-containing protein 19
3swp_B7e-555820322168NAC domain-containing protein 19
3swp_C7e-555820322168NAC domain-containing protein 19
3swp_D7e-555820322168NAC domain-containing protein 19
4dul_A5e-555820319165NAC domain-containing protein 19
4dul_B5e-555820319165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00257DAPTransfer from AT2G02450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004499353.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0527200.0BT052720.1 Medicago truncatula clone MTYFH_FI_FJ_FK1G-G-1 unknown mRNA.
GenBankBT1438150.0BT143815.1 Medicago truncatula clone JCVI-FLMt-12K22 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027190213.10.0NAC domain-containing protein 35
SwissprotQ9ZVP81e-112NAC35_ARATH; NAC domain-containing protein 35
TrEMBLA0A3Q7XRJ10.0A0A3Q7XRJ1_CICAR; NAC domain-containing protein 35
STRINGXP_004499353.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72033146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.11e-110NAC domain containing protein 35
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Okajima K
    Molecular mechanism of phototropin light signaling.
    J. Plant Res., 2016. 129(2): p. 149-57
    [PMID:26815763]
  3. Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M
    Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii.
    J Phys Chem B, 2018. 122(6): p. 1801-1815
    [PMID:29355019]