PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004499229.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family BBR-BPC
Protein Properties Length: 338aa    MW: 37735.6 Da    PI: 10.1223
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004499229.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind379.46e-11613381301
       GAGA_bind   1 mdddgsrernkg.yyepa..aslkenl..glqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnklla.lllven 89 
                     mdd  ++ r+k+ +y++a  + l +++   +q+m+++aerd++i+ernlalsekkaa         qrd+a+aern+al+erdn++++ l+++en
  XP_004499229.1   1 MDDR-ENARHKAdQYKSAqgQWLMQHQpsMKQIMAIMAERDQAIQERNLALSEKKAAXXXXXXXXXQRDTAIAERNNALMERDNAIATtLQFREN 94 
                     7777.445999999*9655544444432146******************************************************9862667777 PP

       GAGA_bind  90 sla....salpvgvqvlsgtksidslqq.lse.pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkv 178
                     +la     ++p+g+q+++g+k+i++l q +++ p+++ds++++re ++++alp   +a+   e+ k+   +rak+pke+k+ +++kk++k+++kv
  XP_004499229.1  95 ALAnggmLSCPPGCQISRGVKHIHHLPQqVNHlPNMGDSSYGTRELHTTNALP---EAPIPAEVGKPT--RRAKRPKESKSVSPNKKTPKTTRKV 184
                     777899899****************98757778****************9999...667777777777..8899********************* PP

       GAGA_bind 179 kkesader...............................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvy 242
                     kkes+d +                               ska++k +dl+ln+v++D+st+P+PvCsCtG+lrqCYkWGnGGWqSaCCttt+Svy
  XP_004499229.1 185 KKESEDLNktmfannktlewkssqdimnggddlnkqiavSKADWKPQDLALNQVAYDDSTMPAPVCSCTGVLRQCYKWGNGGWQSACCTTTLSVY 279
                     ****995559************************************************************************************* PP

       GAGA_bind 243 PLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                     PLP+++++r+aRi+grKmS++af+klL++LaaeG+dls+pvDLkdhWAkHGtn+++ti+
  XP_004499229.1 280 PLPAVPNKRHARIGGRKMSGSAFNKLLSRLAAEGHDLSHPVDLKDHWAKHGTNRYITIK 338
                     **********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062174.4E-971338IPR010409GAGA-binding transcriptional activator
SMARTSM012261.3E-1551338IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MDDRENARHK ADQYKSAQGQ WLMQHQPSMK QIMAIMAERD QAIQERNLAL SEKKAAXXXX  60
XXXXXQRDTA IAERNNALME RDNAIATTLQ FRENALANGG MLSCPPGCQI SRGVKHIHHL  120
PQQVNHLPNM GDSSYGTREL HTTNALPEAP IPAEVGKPTR RAKRPKESKS VSPNKKTPKT  180
TRKVKKESED LNKTMFANNK TLEWKSSQDI MNGGDDLNKQ IAVSKADWKP QDLALNQVAY  240
DDSTMPAPVC SCTGVLRQCY KWGNGGWQSA CCTTTLSVYP LPAVPNKRHA RIGGRKMSGS  300
AFNKLLSRLA AEGHDLSHPV DLKDHWAKHG TNRYITIK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00540DAPTransfer from AT5G42520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004499229.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1242160.0AC124216.27 Medicago truncatula clone mth2-34o22, complete sequence.
GenBankAC1743150.0AC174315.4 Medicago truncatula clone mth2-165c4, complete sequence.
GenBankEF1020930.0EF102093.1 Medicago truncatula GAGA-binding transcriptional activator (BBR/BPC6) gene, complete cds.
GenBankEF1020940.0EF102094.1 Medicago truncatula GAGA-binding transcriptional activator (BBR/BPC6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004499229.10.0protein BASIC PENTACYSTEINE6
SwissprotQ8L9991e-142BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBLA0A1S2Y5R80.0A0A1S2Y5R8_CICAR; protein BASIC PENTACYSTEINE6
STRINGXP_004499229.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69053449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.11e-137basic pentacysteine 6