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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004499211.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | SRS | ||||||||
Protein Properties | Length: 330aa MW: 36526.9 Da PI: 7.825 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 221.4 | 1.9e-68 | 119 | 267 | 4 | 153 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskk 98 g+++CqdCGnqakkdC h RCRtCCksrgf+C+thvkstWvpaakrrerqqql+a++++++++++ ++s+r+re+++ + ++s ++++ +++ XP_004499211.1 119 GGMNCQDCGNQAKKDCPHLRCRTCCKSRGFQCSTHVKSTWVPAAKRRERQQQLTALQQQNQQQQQFHSSRRHRETQT-AVVSASLASTPLPITTT 212 789*********************************************************99999999999999744.44444444555555667 PP DUF702 99 eletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 le+ ++P+e++s+avfrcv+vs++d ++e +aYqtav+igG vfkGiLydqGle XP_004499211.1 213 GLEVGNFPPELNSPAVFRCVKVSAMDAQDERYAYQTAVNIGGRVFKGILYDQGLE 267 899999***********************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 3.7E-65 | 120 | 267 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 2.0E-26 | 122 | 164 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 2.9E-23 | 219 | 266 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048467 | Biological Process | gynoecium development |
Sequence ? help Back to Top |
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Protein Sequence Length: 330 aa Download sequence Send to blast |
MAGFFSLSSG RGKEEVREEE ENNNNNNNNN LFRNEEIYNK GFEIWPQQQH SSFHHHHQHQ 60 HHQNLNNFYT FGVGSSSTTN RRNNDNNNIN DDVVSVSFSD ESTRFGLTVM RPGVGLSGGG 120 MNCQDCGNQA KKDCPHLRCR TCCKSRGFQC STHVKSTWVP AAKRRERQQQ LTALQQQNQQ 180 QQQFHSSRRH RETQTAVVSA SLASTPLPIT TTGLEVGNFP PELNSPAVFR CVKVSAMDAQ 240 DERYAYQTAV NIGGRVFKGI LYDQGLEGNY TSAHGGGAGE GSSGGGEGQQ QNLLTTATTS 300 VNNPFEYSSL YPAPLNAFMA GTQFFPPPRS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004499211.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ016337 | 0.0 | DQ016337.1 Cicer reticulatum clone Crt93 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004499211.1 | 0.0 | protein SHI RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A1S2Y4F0 | 0.0 | A0A1S2Y4F0_CICAR; protein SHI RELATED SEQUENCE 5-like | ||||
STRING | XP_004499211.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF882 | 34 | 125 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75520.1 | 2e-66 | SHI-related sequence 5 |