PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004499102.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | B3 | ||||||||
Protein Properties | Length: 595aa MW: 66592.9 Da PI: 8.4683 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 51.2 | 2.2e-16 | 24 | 105 | 11 | 98 |
HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ++s +++p f+ +++g + ++ ++l+ +sg++W+v+l + + ++ GW+ Fv +++Lk gD +vF+++g+ f +v+vf XP_004499102.1 24 SSSETMRIPDGFICQMEGRT-CG-LVSLTGPSGNTWQVRL--VEQNNYLFFHHGWSTFVGDHNLKYGDLLVFRYEGQLHF--TVQVFG 105 567889******98888774.54.9***************..888889*************************9986555..888886 PP | |||||||
2 | B3 | 50.7 | 3.3e-16 | 255 | 346 | 1 | 95 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+k+ ++ +v+ s l +p +f +h ++++++++l +++g+ W+v+ ++ +++l +GW Fv+ n++k+gD+++F+l+++ e +v XP_004499102.1 255 FVKIIKSFNVSGSYTLNIPYQFSMSHF--PNCKIKIILHNLKGEHWTVNSVPtTRVHTSHTLCGGWMAFVRGNNIKVGDVCIFELIRECEL--RV 345 778888888999999********9998..55999***************954566666799************************996555..44 PP E CS B3 95 k 95 + XP_004499102.1 346 R 346 4 PP | |||||||
3 | B3 | 50.4 | 4.2e-16 | 484 | 571 | 1 | 91 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+k++++ +v+ s l +p +f ++h + ++++tl++++g+ W+v+ + k+++ +++ +GW Fv++n+++ gD+++F+l+++ e XP_004499102.1 484 FVKIMKKFNVSGSYTLKIPYQFSAAHlpS----YKTEVTLRNSKGQCWTVNSVPDAKGRTiHTFCGGWMAFVRDNDINFGDTCIFELVSH--YE 571 89999999***************999533....3458***************777777667*************************9864..33 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.2E-20 | 12 | 109 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 14.212 | 14 | 107 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.8E-10 | 17 | 107 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.40E-15 | 21 | 104 | No hit | No description |
SuperFamily | SSF101936 | 1.28E-20 | 23 | 112 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.1E-13 | 24 | 105 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 9.8E-22 | 246 | 347 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.02E-23 | 248 | 348 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.40E-19 | 253 | 347 | No hit | No description |
Pfam | PF02362 | 1.6E-12 | 255 | 346 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.0E-12 | 255 | 351 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.76 | 255 | 351 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.0E-21 | 476 | 577 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.34E-23 | 477 | 578 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.49E-18 | 482 | 576 | No hit | No description |
Pfam | PF02362 | 1.7E-13 | 484 | 570 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.3E-9 | 484 | 580 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.915 | 484 | 580 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 595 aa Download sequence Send to blast |
MACDCKGKLN VRRPHFYEVY SLASSSETMR IPDGFICQME GRTCGLVSLT GPSGNTWQVR 60 LVEQNNYLFF HHGWSTFVGD HNLKYGDLLV FRYEGQLHFT VQVFGENACE KEAAFHSECN 120 LNSFNFDNIK GQKSDAMESS SLDVVGGDQR KMRCDTIENQ ELALGIAGRD LSKYEVVKPI 180 SIIREIEETY KECSTSAVPV PFHPANINED EEAAILYRSG KEDDHYIVSG ASMSKLSAHD 240 EKKIAQSFTS SFPYFVKIIK SFNVSGSYTL NIPYQFSMSH FPNCKIKIIL HNLKGEHWTV 300 NSVPTTRVHT SHTLCGGWMA FVRGNNIKVG DVCIFELIRE CELRVRVAEV GKDGLDCQVG 360 KLAFSMLSTG HDVACNKTSK YKPKNPKVSS KCRNKVDLFD KKISKIGQEA VLSIDLKTSG 420 RASNTSKKMG LCPQSKASHK KLAVSRRHRV EDELSSQAKA GLRMLFALDE QRVAQAFSSP 480 FPNFVKIMKK FNVSGSYTLK IPYQFSAAHL PSYKTEVTLR NSKGQCWTVN SVPDAKGRTI 540 HTFCGGWMAF VRDNDINFGD TCIFELVSHY EMQVYISGVG KEGLDDQNGL VKLNG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004499102.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC148404 | 1e-176 | AC148404.7 Medicago truncatula clone mth2-28d4, complete sequence. | |||
GenBank | AC202488 | 1e-176 | AC202488.8 Medicago truncatula clone mth2-180n9, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004499102.1 | 0.0 | B3 domain-containing protein Os01g0723500-like isoform X1 | ||||
TrEMBL | A0A1S2Y4B7 | 0.0 | A0A1S2Y4B7_CICAR; B3 domain-containing protein Os01g0723500-like isoform X1 | ||||
STRING | XP_004499102.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11470 | 32 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 9e-21 | B3 family protein |