PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

WRKY

Protein Properties

Length: 163aa MW: 19010.8 Da PI: 4.9483

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004498847.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	99.8	1.6e-31	102	160	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYG+K+vk+s++pr+YYrC+ +gCpvkk+ve++++dp++v++tYeg H+h+ XP_004498847.1 102 LDDGYRWRKYGKKMVKDSPNPRNYYRCSVEGCPVKKRVEKDKDDPRYVITTYEGMHTHP 160 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.6E-34	88	162	IPR003657	WRKY domain
SuperFamily	SSF118290	7.98E-29	95	162	IPR003657	WRKY domain
PROSITE profile	PS50811	31.927	97	162	IPR003657	WRKY domain
SMART	SM00774	1.3E-36	102	161	IPR003657	WRKY domain
Pfam	PF03106	3.8E-25	103	160	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 163 aa Download sequence Send to blast
MTERNPIAAD SSPDSDFSNQ WPFELSDYLN FDDNQWLQID PTTESNFVYH ANELEGDHSH 60 IEGTSSSTRD TNSTTMSESE NWKKELVKER VAFKTKSEVE ILDDGYRWRK YGKKMVKDSP 120 NPRNYYRCSV EGCPVKKRVE KDKDDPRYVI TTYEGMHTHP TPS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-26	92	163	7	78	Probable WRKY transcription factor 4
2lex_A	2e-26	92	163	7	78	Probable WRKY transcription factor 4
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004498847.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004498847.1	1e-120	probable WRKY transcription factor 50
TrEMBL	A0A1S2Y4V6	1e-119	A0A1S2Y4V6_CICAR; probable WRKY transcription factor 50
STRING	XP_004498847.1	1e-119	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1120	34	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26170.1	2e-41	WRKY DNA-binding protein 50