PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004498847.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family WRKY
Protein Properties Length: 163aa    MW: 19010.8 Da    PI: 4.9483
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004498847.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.81.6e-31102160159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYG+K+vk+s++pr+YYrC+ +gCpvkk+ve++++dp++v++tYeg H+h+
  XP_004498847.1 102 LDDGYRWRKYGKKMVKDSPNPRNYYRCSVEGCPVKKRVEKDKDDPRYVITTYEGMHTHP 160
                     59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-3488162IPR003657WRKY domain
SuperFamilySSF1182907.98E-2995162IPR003657WRKY domain
PROSITE profilePS5081131.92797162IPR003657WRKY domain
SMARTSM007741.3E-36102161IPR003657WRKY domain
PfamPF031063.8E-25103160IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MTERNPIAAD SSPDSDFSNQ WPFELSDYLN FDDNQWLQID PTTESNFVYH ANELEGDHSH  60
IEGTSSSTRD TNSTTMSESE NWKKELVKER VAFKTKSEVE ILDDGYRWRK YGKKMVKDSP  120
NPRNYYRCSV EGCPVKKRVE KDKDDPRYVI TTYEGMHTHP TPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-2692163778Probable WRKY transcription factor 4
2lex_A2e-2692163778Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004498847.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004498847.11e-120probable WRKY transcription factor 50
TrEMBLA0A1S2Y4V61e-119A0A1S2Y4V6_CICAR; probable WRKY transcription factor 50
STRINGXP_004498847.11e-119(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112034110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.12e-41WRKY DNA-binding protein 50