PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004498814.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family WRKY
Protein Properties Length: 272aa    MW: 30856.9 Da    PI: 8.0075
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004498814.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.38.7e-30129186258
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                      Dgy+WrKYGqK+ k+++ pr+Y+rC++a +Cp kkkv+rs edp++++ tYegeHnh
  XP_004498814.1 129 MDGYQWRKYGQKVTKDNPSPRAYFRCSHApSCPIKKKVQRSLEDPTILVATYEGEHNH 186
                     6***************************99**************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081125.04123189IPR003657WRKY domain
SuperFamilySSF1182903.66E-25125188IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.8E-28125187IPR003657WRKY domain
SMARTSM007745.2E-33128188IPR003657WRKY domain
PfamPF031069.3E-25130186IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MEFSTCVDTS LNLNFNVPSI HKDEVLVEEL NRLNCENKRL NETLTNMCEN YEAMQKHLSQ  60
LMNQDFENQT QQSRKRKFGI KGININNECS NVTDDESLIK RSCRDVSSPN KAYKVLFKTE  120
AFNNSLYVMD GYQWRKYGQK VTKDNPSPRA YFRCSHAPSC PIKKKVQRSL EDPTILVATY  180
EGEHNHGHKK SEMSLVSSQS EESPVVSVHV SSPKPIIQKT CPTIKDDLVD NVPKSSMQHF  240
LVQQMANSLT KDPNFTAALA TAISGRILGS DF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-191301861974Probable WRKY transcription factor 4
2ayd_A1e-191281861471WRKY transcription factor 1
2lex_A1e-191301861974Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004498814.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004498814.20.0probable WRKY transcription factor 40
TrEMBLA0A1S2Y4T00.0A0A1S2Y4T0_CICAR; probable WRKY transcription factor 40
STRINGXP_004498814.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97334115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.16e-69WRKY DNA-binding protein 40