PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004498813.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family WRKY
Protein Properties Length: 265aa    MW: 29979.9 Da    PI: 7.5606
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004498813.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY87.31.3e-2795153259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dgy+WrKYGqK+ k++  pr+Y+rC+ a +Cp+kkkv+++ +d ++++ tY geHnh 
  XP_004498813.1  95 QDGYQWRKYGQKVTKENASPRAYFRCSIApSCPAKKKVQKCIHDRSIIVATYDGEHNHV 153
                     8***************************99****************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.3E-2788155IPR003657WRKY domain
PROSITE profilePS5081124.67389155IPR003657WRKY domain
SuperFamilySSF1182901.44E-2390154IPR003657WRKY domain
SMARTSM007747.0E-2994154IPR003657WRKY domain
PfamPF031061.9E-2295152IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MDEKVKTLQL EIQHVREENN TLRFMVEVMN IKCTKLESHL QEINKEEQKG ISSNQIGLVP  60
NLDTTKRARQ EFPTTKKSLQ VFVKTHPNDD SLMIQDGYQW RKYGQKVTKE NASPRAYFRC  120
SIAPSCPAKK KVQKCIHDRS IIVATYDGEH NHVSPHESLR PSSSSTPKVP SSIANNKSPL  180
PTLNDTEVIN TDFVVSDNWT QSSTEICEDI MQKCGYGRHI KIKEFASSLI KDPDFTAALA  240
EAVAQTITGQ HERQGLNLNL NLSEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A9e-18931551374WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004498813.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1286602e-43AC128660.31 Medicago truncatula clone mth2-14p23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004498814.20.0probable WRKY transcription factor 40
TrEMBLA0A1S2Y4T00.0A0A1S2Y4T0_CICAR; probable WRKY transcription factor 40
STRINGXP_004498813.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF73983044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.12e-40WRKY DNA-binding protein 40