PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004498694.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family SRS
Protein Properties Length: 319aa    MW: 34787.8 Da    PI: 7.6494
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004498694.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702174.55e-541252776153
          DUF702   6 asCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa......aeaaskrkrelkskkqsalsstklssa 94 
                       C+dCGn+akkdC+++RCRtCCk rg+dC th+kstW+p+++rrer  +      +  a++      ++++   + +++++++++ +s  +ss 
  XP_004498694.1 125 RVCEDCGNRAKKDCVFRRCRTCCKGRGYDCCTHLKSTWIPSTRRREREIEVVGGGGDGVAKRlksligSSQNVSANSHSSNSNATTPKSFATSSC 219
                     58*********************************************877766655555555344443222222222223334444444444444 PP

          DUF702  95 eskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                     ++   ++  +lP +v+++avf+c rv+++ +ge+e+aY ++v+i+GhvfkG+Lyd+G++
  XP_004498694.1 220 HQDAGFKE-TLPGHVQAPAVFKCHRVTAIGNGEDEFAYLATVHISGHVFKGFLYDHGVD 277
                     44444443.3***********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR016235.0E-24126168IPR006510Zinc finger, lateral root primordium type 1
PfamPF051427.2E-51126277IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016241.1E-23229276IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MSMLGLRDLL LIAPTPSSIH HHQQQQNQNQ PISTDQNSNH PLPSPSSLSV GFGIFPLLTT  60
TPCIPQSQNN ESQENPNNNN FWNLRMYQEP KKGVSVINVD DEKINNNKMV VMESEENGVY  120
GSEYRVCEDC GNRAKKDCVF RRCRTCCKGR GYDCCTHLKS TWIPSTRRRE REIEVVGGGG  180
DGVAKRLKSL IGSSQNVSAN SHSSNSNATT PKSFATSSCH QDAGFKETLP GHVQAPAVFK  240
CHRVTAIGNG EDEFAYLATV HISGHVFKGF LYDHGVDGKN AMHCVSELQL GNNCSGKNGE  300
CSSAIGVPTN INTYPASAT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1166187RRREREIEVVGGGGDGVAKRLK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004498694.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU5707633e-92CU570763.5 M.truncatula DNA sequence from clone MTH2-172G19 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004498694.10.0protein LATERAL ROOT PRIMORDIUM 1-like
TrEMBLA0A1S2Y3B90.0A0A1S2Y3B9_CICAR; protein LATERAL ROOT PRIMORDIUM 1-like
STRINGXP_004498694.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57043154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.24e-45Lateral root primordium (LRP) protein-related