![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_004498660.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
|
||||||||
Family | CPP | ||||||||
Protein Properties | Length: 869aa MW: 94551.3 Da PI: 6.6982 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 49 | 1.2e-15 | 498 | 534 | 3 | 39 |
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 +kgC+CkkskClk+YC+Cf ag +C+e C C++C N+ XP_004498660.1 498 SKGCHCKKSKCLKLYCDCFGAGIYCGEGCACQSCGNR 534 69*********************************97 PP | |||||||
2 | TCR | 48.9 | 1.3e-15 | 584 | 622 | 1 | 39 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCk+skC kkYCeCf+a++ Cs+ C+C++CkN XP_004498660.1 584 RHKRGCNCKRSKCTKKYCECFQANVGCSSGCRCDGCKNV 622 589***********************************6 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 1.2E-13 | 496 | 537 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 33.927 | 497 | 624 | IPR005172 | CRC domain |
Pfam | PF03638 | 4.5E-12 | 499 | 534 | IPR005172 | CRC domain |
SMART | SM01114 | 4.6E-16 | 584 | 625 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 2.2E-11 | 586 | 621 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 869 aa Download sequence Send to blast |
MDSPEPSNIK TTSSSSLSTL NASSSQSPQL QESPFLRFVN TLSPIKPIKA THVVHGFLGL 60 NSPPLVFKSP RISGLRETQY LERPQGTHLS DGGISQSDIG GNSIVEARGR LEKLKTQQPL 120 LEGFITDTPK DFDINIDANT QSCSPPPSVD KYLADPEDDQ MYSVNPEMEQ STDAAVESSL 180 TESKKVILKF DKEHGPSNRA EELLPLSEES NMVHQERAAY VEEPANVEGE RNGAEWISQE 240 HTVLDSSSGA DVFDQHHYHD SHPQCAGNDQ RHHSDCTPQL MPDHNQVVKE FENCNEMVST 300 SQVNSENIPQ DGSEASLKYH SIRRRCLQFE EAASIDLGGT KSHVKSNATS SNMKMVPVTG 360 SKPPGIGLHL NSIINAMPAS GASTTAVRLS NGLQGIKSKP TISLHKVENV TQSSILSNID 420 GQSVIDARNE IHETDASVAA DSFISESSIL TEPIALYPEN AHDKRRLSPT DTENTEEFNH 480 PSTSKKKKKT ITDDGGGSKG CHCKKSKCLK LYCDCFGAGI YCGEGCACQS CGNRIEFEEK 540 VVETKQHIES RNPNAFAPKI VQCVADVPLN NMEDVSMTTP ASARHKRGCN CKRSKCTKKY 600 CECFQANVGC SSGCRCDGCK NVFGKKEDYV AIEHTSSIET ESSIIEEGLD DKLYNRQKMV 660 VSRTGLLRAP NHLSPLTPSL QCSDQGKQAA KSRLASANWT KSSKKSRSSL AHTARNDSQK 720 NAPPCVSLKE NEWTDIVPYQ PSNVCGIRQL SGGSLRWHSS SPITPSANFG DESNGKLFDI 780 LEDETPDVLK ETSTPIKSVK ANSPIHKRVS PPQSHLLRIG SSSSGGGLRS GRKFILQSVP 840 SFPPLTPCAD SKVNCNSNED SSNNAKKVA |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 2e-16 | 499 | 622 | 12 | 121 | Protein lin-54 homolog |
5fd3_B | 2e-16 | 499 | 622 | 12 | 121 | Protein lin-54 homolog |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_004498660.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | DQ455517 | 1e-105 | DQ455517.1 Medicago truncatula cDNA-AFLP fragment BT42M33_467 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004498660.1 | 0.0 | protein tesmin/TSO1-like CXC 2 isoform X1 | ||||
TrEMBL | A0A1S2Y537 | 0.0 | A0A1S2Y537_CICAR; protein tesmin/TSO1-like CXC 2 isoform X1 | ||||
STRING | XP_004498660.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8565 | 28 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G22780.1 | 1e-36 | Tesmin/TSO1-like CXC domain-containing protein |