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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004498566.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | WRKY | ||||||||
Protein Properties | Length: 346aa MW: 37508.6 Da PI: 10.2059 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 98.5 | 4.1e-31 | 269 | 326 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C++ gCp++k+ver+ +dp ++++tYegeH+h XP_004498566.1 269 DEYSWRKYGQKPIKGSPYPRGYYKCSTVrGCPARKHVERAPDDPAMLIVTYEGEHRHA 326 9************************9888****************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 4.3E-17 | 221 | 265 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 4.9E-33 | 254 | 326 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.963 | 262 | 328 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.57E-26 | 263 | 327 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.6E-37 | 267 | 327 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.3E-26 | 269 | 325 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009938 | Biological Process | negative regulation of gibberellic acid mediated signaling pathway | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:1990841 | Molecular Function | promoter-specific chromatin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MAVELMGFPK LDEQKAIQEA ASEGLKGMEH LILTLSHQPT QLNTQLTDLT VSKFKKFISL 60 LNRTGHARFR RAPVHFSTSP VRPQTPPVQS TPSTSSLPPP QVQSSAISLP PHFPSPSSAP 120 VTNRHAPANF VQPQSHSLTL DFTKPNDVVL NKPMVELEFS KETATFSVSS NSSFMSSAIT 180 GDGSVSNGKQ GSSIFLTPVA VASTAPTISG GKPPLSSAPS KKRCHDHGDH SDDVSGTNKC 240 HCVKRRKNRV KRTVRVPAIS SKTADIPPDE YSWRKYGQKP IKGSPYPRGY YKCSTVRGCP 300 ARKHVERAPD DPAMLIVTYE GEHRHAIQAA MQENAAGVVG LVFEST |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 5e-21 | 265 | 329 | 15 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 5e-21 | 265 | 329 | 15 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Regulates rhizobacterium B.cereus AR156-induced systemic resistance (ISR) to P.syringae pv. tomato DC3000, probably by activating the jasmonic acid (JA)- signaling pathway (PubMed:26433201). {ECO:0000250, ECO:0000269|PubMed:26433201}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00464 | DAP | Transfer from AT4G31550 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004498566.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly during leaf senescence (PubMed:11722756). Repressed by rhizobacterium B.cereus AR156 in leaves, and to a lower extent, by P.fluorescens WCS417r (PubMed:26433201). {ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:26433201}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004498566.1 | 0.0 | probable WRKY transcription factor 17 | ||||
Swissprot | Q9SV15 | 1e-126 | WRK11_ARATH; Probable WRKY transcription factor 11 | ||||
TrEMBL | A0A1S2Y487 | 0.0 | A0A1S2Y487_CICAR; probable WRKY transcription factor 17 | ||||
STRING | XP_004498566.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1314 | 34 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31550.1 | 1e-104 | WRKY DNA-binding protein 11 |