PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004498549.2
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bZIP
Protein Properties Length: 339aa    MW: 36931.7 Da    PI: 5.2102
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004498549.2genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_143.66.3e-14171222455
                     XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 
                      kr rrk +NRe+ArrsR+RK+a +  Le  v++L  eN +L k+l   +++
  XP_004498549.2 171 MKRLRRKVSNRESARRSRRRKQAHLTDLEVQVEQLRLENASLFKQLTDASQQ 222
                     79**************************************999655544444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.3E-13168232IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.346170233IPR004827Basic-leucine zipper domain
PfamPF001701.4E-11171221IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.06E-11172222No hitNo description
Gene3DG3DSA:1.20.5.1706.7E-11172224No hitNo description
CDDcd147022.42E-7173224No hitNo description
PROSITE patternPS000360175190IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MEPKWSTILA PSSIFSGFDD LKWITTEFDH ELFTKRPIAG GIETANESAN DNDVKPFKVD  60
PFTVVGDVCS GNLADAADFQ NLDAVTSFST CGEATNSTFV SSQNLTSKHS TITPTIDSQS  120
SISATVTSPV SANKPTNQAK GVITTSGSSR DPSDEDDEAG PCEQSTNPID MKRLRRKVSN  180
RESARRSRRR KQAHLTDLEV QVEQLRLENA SLFKQLTDAS QQFREANTNN RVLKSDVEAL  240
RAKVKLAEDM VSRGTLPTFN NQLLQNQNQL NTTSPQINTS NLRCMQHVSP TITIHGNIAS  300
YGVSGHNSAI GLGDFDITCN DFNNGVNSDA VSSLTSIWP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174190RRKVSNRESARRSRRRK
2184191RRSRRRKQ
3186191SRRRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters. {ECO:0000269|PubMed:11133985}.
UniProtTranscription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004498549.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by glucose. {ECO:0000269|PubMed:18841482}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2023807e-75AC202380.14 Medicago truncatula clone mth2-160m23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004498549.20.0basic leucine zipper 9
SwissprotQ6H5007e-59RSBZ4_ORYSJ; bZIP transcription factor RISBZ4
SwissprotQ9FUD36e-59BZIP9_ARATH; Basic leucine zipper 9
TrEMBLA0A1S2Y4730.0A0A1S2Y473_CICAR; basic leucine zipper 9
STRINGXP_004498549.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41953458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.14e-46basic leucine zipper 9
Publications ? help Back to Top
  1. Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F
    A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif.
    J. Biol. Chem., 2001. 276(17): p. 14139-52
    [PMID:11133985]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Ortiz-Espín A, et al.
    Mitochondrial AtTrxo1 is transcriptionally regulated by AtbZIP9 and AtAZF2 and affects seed germination under saline conditions.
    J. Exp. Bot., 2017. 68(5): p. 1025-1038
    [PMID:28184497]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  6. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]