PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004498336.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C2H2
Protein Properties Length: 360aa    MW: 41600.4 Da    PI: 8.0728
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004498336.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.00161942123
                    EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                    y C++Cg + s k + ++Hi++ H
  XP_004498336.1 19 YYCQYCGICRSKKTLITSHINSvH 42
                    89*******************988 PP
2zf-C2H220.11.7e-066586223
                    EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                    +C+ Cg sF+ + +L +H+++H
  XP_004498336.1 65 TCEECGASFKKPAYLLQHMQSH 86
                    6*******************99 PP
3zf-C2H219.23.3e-0692116123
                     EEET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                     y+C+  dC+ s++rk++L+rH+  H
  XP_004498336.1  92 YVCSleDCNASYRRKDHLNRHLLQH 116
                     99*******************9887 PP
4zf-C2H217.98.3e-06121146123
                     EEET..TTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                     +kCp  +C+  Fs +snLkrHi   H
  XP_004498336.1 121 FKCPieNCKSDFSLQSNLKRHIDEiH 146
                     89********************8877 PP
5zf-C2H221.65.5e-07161185123
                     EEET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                     ++Cp   Cgk+F+  s+L++H  +H
  XP_004498336.1 161 FVCPeiGCGKVFRYASQLQKHEDSH 185
                     89*******************9888 PP
6zf-C2H217.31.3e-05251276123
                     EEET..TTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                     ++C+   C+ +Fs+ksnL++H +  H
  XP_004498336.1 251 FQCEfeGCDCTFSTKSNLHTHEKAvH 276
                     89*******************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.7871947IPR007087Zinc finger, C2H2
SMARTSM00355261942IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.44E-1163116No hitNo description
PROSITE profilePS5015713.3186491IPR007087Zinc finger, C2H2
SMARTSM003550.00666486IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.3E-96591IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002806686IPR007087Zinc finger, C2H2
SMARTSM003550.001492116IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.38892121IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.3E-1092118IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028094116IPR007087Zinc finger, C2H2
SuperFamilySSF576672.11E-6102147No hitNo description
Gene3DG3DSA:3.30.160.603.9E-6119143IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.118121151IPR007087Zinc finger, C2H2
SMARTSM003550.031121146IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280123146IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.2E-8155185IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.39E-5157187No hitNo description
SMARTSM003554.6E-4161185IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.24161190IPR007087Zinc finger, C2H2
PROSITE patternPS000280163185IPR007087Zinc finger, C2H2
SMARTSM003551.1193218IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280195218IPR007087Zinc finger, C2H2
SMARTSM0035535221242IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.4E-8232273IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.08E-9232290No hitNo description
SMARTSM003550.0064251276IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.133251281IPR007087Zinc finger, C2H2
PROSITE patternPS000280253276IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.3E-5275305IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003555.9282308IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280284308IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MEEAMLSDEL PKFRDIRRYY CQYCGICRSK KTLITSHINS VHKEEVEKTR VEAEAETEGV  60
LKANTCEECG ASFKKPAYLL QHMQSHSLER PYVCSLEDCN ASYRRKDHLN RHLLQHKGKT  120
FKCPIENCKS DFSLQSNLKR HIDEIHDENS TSVSSENQKQ FVCPEIGCGK VFRYASQLQK  180
HEDSHVKLET IDVVCLEPGC MKHFTNAECL KAHVKSCHQH MTCETCGSKQ LKKNMKRHLR  240
THEASSPSKV FQCEFEGCDC TFSTKSNLHT HEKAVHIQVK PFVCGFPDCG MRFAYKHVRD  300
NHEKTGKHVF TLGDFEEADE LFRLRPRGGS KRKCPTVEML VRKRVTPPSH LENLFMQESE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2i13_A3e-155330511184Aart
2i13_B3e-155330511184Aart
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1230236LKKNMKR
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004498336.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1221634e-95AC122163.20 Medicago truncatula clone mth2-16l2, complete sequence.
GenBankAC1260064e-95AC126006.22 Medicago truncatula clone mth2-4c19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004498336.10.0transcription factor IIIA
SwissprotQ84MZ41e-148TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A1S2Y2L60.0A0A1S2Y2L6_CICAR; transcription factor IIIA
STRINGXP_004498336.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30693370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-151transcription factor IIIA