|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
XP_004498177.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
|
Family |
B3 |
Protein Properties |
Length: 434aa MW: 49413.7 Da PI: 8.8797 |
Description |
B3 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
XP_004498177.1 | genome | NCBI | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 51.8 | 1.5e-16 | 14 | 96 | 10 | 98 |
HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
B3 10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
+l+s++l++p +f++++g + s tl+ ++g +W++ l +k ++r+++ +GW++Fv+ + g f+vF+++g+s+f v++f+
XP_004498177.1 14 TLQSRQLRIPDNFLRKYGAQ--LSAIATLTVPDGTVWRLGL--KKVDNRIWFVDGWQDFVQRYSIGIGYFLVFMYEGSSSF--IVHIFN 96
455667***********977..8999***************..*********************************99999..999986 PP
|
2 | B3 | 61.1 | 1.8e-19 | 303 | 393 | 4 | 98 |
E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
B3 4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
vl ps+ + ++++lp fae++ +g++ ++l++++gr+W v++ yr+++ l++GW eF +n+L egD++vF+l ++++ l v++f
XP_004498177.1 303 VLRPSYLYRGCIMYLPSCFAEKNlNGVSG---FIKLQTPDGRQWPVRCLYRGGR--AKLSQGWYEFTLENNLGEGDVCVFELLRTRDVVLQVTLF 392
78899******************877743...5***************665555..66***********************99999988999998 PP
- CS
B3 98 r 98
r
XP_004498177.1 393 R 393
7 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 434 aa
Download sequence Send
to blast |
MPRPSFHKLI LPITLQSRQL RIPDNFLRKY GAQLSAIATL TVPDGTVWRL GLKKVDNRIW 60 FVDGWQDFVQ RYSIGIGYFL VFMYEGSSSF IVHIFNMSTS ELNYQSAMRS RNEGPCYPNY 120 HHIFDEMEDV DSFDFLDSSP SNLTPGALQD KVFAGSIDQL SQGKNHTPSL QNLFNGGSKL 180 NRVNWGDIGG ALSSKSPNQS TRDIGVQFNA VEFKKSTEEL KLRYPNEEGV NNNSSNKPAR 240 KKRKSELKDA QEPSGDNEDE AEMRYRFYES ASARKRTVTA EERERAINDA KAFEPSNPFC 300 RVVLRPSYLY RGCIMYLPSC FAEKNLNGVS GFIKLQTPDG RQWPVRCLYR GGRAKLSQGW 360 YEFTLENNLG EGDVCVFELL RTRDVVLQVT LFRVAEDESG LFNPSMQPNQ NVSHAKLLNP 420 HLQHRISTTK SVKN
|
3D Structure ? help Back to Top |
|
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
4i1k_A | 3e-73 | 266 | 396 | 15 | 144 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 3e-73 | 266 | 396 | 15 | 144 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Involved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}. |