PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_004497948.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

C2H2

Protein Properties

Length: 190aa MW: 21595.3 Da PI: 8.7998

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004497948.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.7	2e-05	57	79	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k Fs++ L H++ H XP_004497948.1 57 YPCKFCNKKFSSSQALGGHQNAH 79 99******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	7.77E-7	56	84	No hit	No description
Gene3D	G3DSA:3.30.160.60	3.0E-5	57	83	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	3.9E-6	57	81	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	11.739	57	84	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	59	79	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
MQFVNGDKKR NLKRKMEETT TLSSTIDSEV SLSLSLGIGI SYSPFKFLKS NEENIEYPCK 60 FCNKKFSSSQ ALGGHQNAHR RERVISKIEK EFQMGTFGLL GPHQLCSYSP ILNHHQYAVG 120 SPFFHHQMHY PNVAPSWTQF VAPIGYANPF GMMNNSLGTP TTPQNNNDNI HYVDDNRQIS 180 SSFPHLFLNH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	8	15	KRNLKRKM

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004497948.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004497948.1	1e-142	zinc finger protein 7-like
TrEMBL	A0A1S2Y1S9	1e-140	A0A1S2Y1S9_CICAR; zinc finger protein 7-like
STRING	XP_004497948.1	1e-141	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14229	12	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05120.1	9e-12	C2H2 family protein