PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004497655.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family TALE
Protein Properties Length: 667aa    MW: 73583.4 Da    PI: 7.0887
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004497655.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox31.23.8e-103603971954
                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     Fe   ++yp+ ++++ LAk++gLt +qV++WF N R +
  XP_004497655.1 360 FEHflHPYPKDSDKQMLAKQTGLTRSQVSNWFINARVR 397
                     564459******************************88 PP
2BELL125.42.2e-40224295172
            BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     erqe+q+kkakL+++l+eV++rY+qy++q+q+vissFe+vag+gsa+ Yt+lAl++iS++FrcLkdai++qi
  XP_004497655.1 224 ERQEIQMKKAKLINMLDEVEQRYRQYHNQMQMVISSFEQVAGIGSARTYTALALQTISKQFRCLKDAITGQI 295
                     79*********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.1E-65150293IPR006563POX domain
PfamPF075264.3E-50155292IPR006563POX domain
PROSITE profilePS5007112.39338401IPR001356Homeobox domain
SMARTSM003894.3E-10341405IPR001356Homeobox domain
CDDcd000868.39E-12341401No hitNo description
SuperFamilySSF466894.71E-17342408IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.4E-29344408IPR009057Homeodomain-like
PfamPF059201.2E-18358397IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009610Biological Processresponse to symbiotic fungus
GO:0009737Biological Processresponse to abscisic acid
GO:0010197Biological Processpolar nucleus fusion
GO:0010201Biological Processresponse to continuous far red light stimulus by the high-irradiance response system
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 667 aa     Download sequence    Send to blast
MATYFHNNSE IQGGSADGLQ TLIFMNPSGY INYSDTPPQQ SQHAGNLVFL NSAANTSIHQ  60
QNLSHAPPQF VGVPLTAEQS VQAHHDISAL HGFPPRMQYN MWNAADPNSA ARESTRATQG  120
LSLSLHAQGS GEEARVSNGG SCSSASNGVS GIQSVLLSSK YLKATQELLD EVVNVNGGIK  180
VEISKKSFEK NKVVGESSTG VSGDGGSVGG DGSGKRSSEL STTERQEIQM KKAKLINMLD  240
EVEQRYRQYH NQMQMVISSF EQVAGIGSAR TYTALALQTI SKQFRCLKDA ITGQIRTANK  300
SLGEDDSFGG KIEGSRLKYV DHHLRQQRAI QQLGMIHHNA WRPQRGLPER SVSVLRAWLF  360
EHFLHPYPKD SDKQMLAKQT GLTRSQVSNW FINARVRLWK PMVEEMYMEE MKEQELNGSE  420
DNKSNKSTEE DPSTKTTQDR VPTSETESKR SFNSKQDITT KNQNINPIVS IATPTTSPIG  480
NNNVRNNSSS GFSFIGSSSE LDGITTTQGS PKRTRNHEIL QSHHNNVLKS SNETTNNGQQ  540
IVSMKFVGGG DERESRDGYC FMGNQTNFIA GFGQYPMEEI GRFDEENFTP RFSGNNNNNG  600
VSLTLGLPHQ SFMPNENIQL GRRLEISENN EFGALNNSNS HSSAAFESIN MQNPKRFAAQ  660
LLPDFVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-16347405563Homeobox protein Meis2
3k2a_B2e-16347405563Homeobox protein Meis2
4xrs_A2e-16347404158Homeobox protein Meis1
4xrs_B2e-16347404158Homeobox protein Meis1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004497655.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2348800.0AB234880.1 Trifolium pratense mRNA for BEL1-like homeodomain transcription factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004497655.10.0BEL1-like homeodomain protein 1
RefseqXP_027189917.10.0BEL1-like homeodomain protein 1
SwissprotQ9SJ560.0BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBLA0A1S2Y1230.0A0A1S2Y123_CICAR; BEL1-like homeodomain protein 1
STRINGXP_004497655.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16273492
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.31e-172BEL1-like homeodomain 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]