PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004497616.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 236aa MW: 27684.2 Da PI: 8.4301 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.9 | 4.1e-19 | 57 | 110 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ ++t+eqle+Le+ F+k+ +++ +++ +L+k+lgL+ rq+ vWFqNrR ++k XP_004497616.1 57 KKKRLTSEQLETLESSFQKEIKLDPQRKMKLSKELGLQPRQIAVWFQNRRSRWK 110 56679************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 113.8 | 1.1e-36 | 57 | 148 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 kk+rl++eq+++LE+sF++e kL+p+rK++l++eLglqprq+avWFqnrR R+ktk+lE+ y+ Lk+++d +++e+++L++ev +L+ lke XP_004497616.1 57 KKKRLTSEQLETLESSFQKEIKLDPQRKMKLSKELGLQPRQIAVWFQNRRSRWKTKNLEQLYDLLKHQFDVVSKEKQQLQDEVMKLKGMLKE 148 9**************************************************************************************88875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.13E-19 | 49 | 114 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.265 | 52 | 112 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.7E-17 | 55 | 116 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.6E-16 | 57 | 110 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.19E-16 | 57 | 113 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-21 | 59 | 119 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 4.4E-5 | 83 | 92 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 87 | 110 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 4.4E-5 | 92 | 108 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0010434 | Biological Process | bract formation | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MEWNCNTTHF LHPPDSSLSF LYNYNQTSFQ GMEVKQQGST ETVLEMEKMM KYGNQDKKKR 60 LTSEQLETLE SSFQKEIKLD PQRKMKLSKE LGLQPRQIAV WFQNRRSRWK TKNLEQLYDL 120 LKHQFDVVSK EKQQLQDEVM KLKGMLKEQG SSSSCGKTQV SAVDYHYREM SGEETETIES 180 TSEAALFGSN RVREKIHHHL NNAGGNFCFN MENNYNMNNT VPVLPYWPAV PYNYRS |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00486 | DAP | Transfer from AT5G03790 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004497616.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004497616.1 | 1e-179 | putative homeobox-leucine zipper protein ATHB-51 | ||||
TrEMBL | A0A1S2Y136 | 1e-177 | A0A1S2Y136_CICAR; putative homeobox-leucine zipper protein ATHB-51 | ||||
STRING | XP_004497616.1 | 1e-178 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3394 | 34 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03790.1 | 4e-48 | homeobox 51 |