 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
XP_004497592.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
|
| Family |
Trihelix |
| Protein Properties |
Length: 498aa MW: 54513 Da PI: 6.7517 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_004497592.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 62.7 | 8.7e-20 | 118 | 205 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
+W++ + +L+ea++e+ ++l+rg+l++ +Weev++++ r + ++s +qCk+k +nl+kryk ++++++++ + s+s++p+f+q+e+
XP_004497592.1 118 EWSDTAIVCLLEAYTEKFTQLNRGNLRGRDWEEVASVVseRCENQSKSVEQCKNKVDNLKKRYKLERHRMNNG-CISTSHWPWFKQMEH 205
5*************************************666677899*************************8.99999********85 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 498 aa
Download sequence Send
to blast |
MASCDDDDDF SILRDDNPHS HHLHQTFAPH HHHHHHHFST ASVQPKPVAD DDTDDYGNPF 60
DDDAGSEKRK DRDEIGDGTT SYGFNKRSKS VSSGNGGVSV GVSIGVGGGA EYRKDREEWS 120
DTAIVCLLEA YTEKFTQLNR GNLRGRDWEE VASVVSERCE NQSKSVEQCK NKVDNLKKRY 180
KLERHRMNNG CISTSHWPWF KQMEHIVGNS LPSKFAEEDK AIVPASNSPR QSKRYGVATS 240
SSGGQVNTLK SKALSNLRWR RVVLKISGAA LTGSDTCNID PKVAMLVSSE VAIASRLGVE 300
VAIVVGGRNF FCGDAWVTAT GLERCTAYQV GMMATVMNSL LLQSTLEKMG VQTRVQTSVS 360
MQEFAEPYNR QRAIRHLEKG RVVIFGGIGF GAGNPLFSTD IASALRASEL NAQAVLKGTN 420
VDGVYDCNSR DNNFTFEHIS FRELVSRGVA TMDMSALTFC EENAIPVVVF NLLAPGNISK 480
ALCGEQVGTL IDQTGALS
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 3ek5_A | 1e-60 | 251 | 491 | 1 | 239 | Uridylate kinase |
| 3ek5_B | 1e-60 | 251 | 491 | 1 | 239 | Uridylate kinase |
| 3ek5_C | 1e-60 | 251 | 491 | 1 | 239 | Uridylate kinase |
| 3ek5_D | 1e-60 | 251 | 491 | 1 | 239 | Uridylate kinase |
| 3ek5_E | 1e-60 | 251 | 491 | 1 | 239 | Uridylate kinase |
| 3ek5_F | 1e-60 | 251 | 491 | 1 | 239 | Uridylate kinase |
| 3ek6_A | 1e-60 | 251 | 491 | 1 | 239 | Uridylate kinase |
| 3ek6_B | 1e-60 | 251 | 491 | 1 | 239 | Uridylate kinase |
| 3ek6_C | 1e-60 | 251 | 491 | 1 | 239 | Uridylate kinase |
| 3ek6_D | 1e-60 | 251 | 491 | 1 | 239 | Uridylate kinase |
| 3ek6_E | 1e-60 | 251 | 491 | 1 | 239 | Uridylate kinase |
| 3ek6_F | 1e-60 | 251 | 491 | 1 | 239 | Uridylate kinase |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC139525 | 1e-108 | AC139525.3 Medicago truncatula clone mth2-26o22, complete sequence. |
| GenBank | AC146788 | 1e-108 | AC146788.13 Medicago truncatula clone mth2-11a6, complete sequence. |
