PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004497095.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family CO-like
Protein Properties Length: 445aa    MW: 49599.3 Da    PI: 5.885
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004497095.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box29.51.5e-091457340
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                    +r C+++  k+++++C  ++ +lC+ C ++ H+       H++v
  XP_004497095.1 14 ARACDNCITKRARWYCAADDAFLCQACDSSVHSAnslarrHERV 57
                    578*****************************657788888876 PP
2CCT682.6e-23391434144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a
  XP_004497095.1 391 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 434
                     9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.9211259IPR000315B-box-type zinc finger
SMARTSM003364.9E-101259IPR000315B-box-type zinc finger
PfamPF006433.0E-81457IPR000315B-box-type zinc finger
CDDcd000218.42E-101559No hitNo description
PROSITE profilePS5101716.083391433IPR010402CCT domain
PfamPF062037.5E-18391433IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MTKNVANAVG GKTARACDNC ITKRARWYCA ADDAFLCQAC DSSVHSANSL ARRHERVRLK  60
TASYKSTGSG SGSGEFINCG PSWHHGFTKK ARTPRHGKQY SASTTLQTTK SSSPGRKNYN  120
PFHLVPEMGF DEVNSISHED NEAQLLYRVP IFDPFVVELC TSPRSEGGPG AVVVTSAFAS  180
DVNTSENKVQ LGGDSNYEME NFHGILPSDI ELAEFAADVE SLLGRGLENE CIGMEELGLV  240
DTKREVYSEG KVKVEDEESH EVVVLEGYKI EGDNIEMGKE SSFELNFDYD DSNETSEEVK  300
EKVELEIGKC GEQNENNNNK GKRKISLQLD YDAVIIAWDG RKCPWTTGDK PNLDADETWP  360
DCTGSCGTEV LYPYGELGGY ECHPVMADGG REARVSRYRE KRRTRLFSKK IRYEVRKLNA  420
EKRPRMKGRF VKRASFAVPT FPLLK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1401417RRTRLFSKKIRYEVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004497095.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150412e-48AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004497095.10.0zinc finger protein CONSTANS-LIKE 16
TrEMBLA0A1S2XZU80.0A0A1S2XZU8_CICAR; zinc finger protein CONSTANS-LIKE 16
STRINGXP_004497095.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14733392
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.11e-99B-box type zinc finger protein with CCT domain