PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004496853.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family HD-ZIP
Protein Properties Length: 713aa    MW: 79617.7 Da    PI: 7.1303
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004496853.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.22.9e-1855109256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     r   ++t+ q++e+e++F++n++p++++r++L ++lgL   q+k+WFqN+R+++k
  XP_004496853.1  55 RVYKRHTQPQIREMEAFFKNNPHPDERQRKQLGRELGLGPMQIKFWFQNKRTQMK 109
                     666789**********************************************998 PP
2START174.56.5e-552354582206
                     HHHHHHHHHHHHHHHC-TT-EEEE..EXCCTTEEEEEEESSS........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkss..esengdevlqkfeeskv.......dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 
                     la  a++el ++ala++p+W  s   e++n+ e+++ f+  +v        ++ea+r+s+ v+m++ +l e l+d++ qW++++      a+t++
  XP_004496853.1 235 LAVVAMEELTTLALAGSPLWIPSNykEILNEAEYTRFFPN-NVigpkligLKSEASRESVTVPMNSINLIEVLMDVN-QWSTMFYgivsNAMTID 327
                     667799****************9999*********99955.667*********************************.***************** PP

                     EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE CS
           START  84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvd 171
                     v+s+g      galq+m+a++q++splv+ R+  f+Ry++q ++g+w++vdvS+d+  + + ss   R++++pSg+li++++ng skvtwvehv+
  XP_004496853.1 328 VLSPGvsgnynGALQVMSADFQVPSPLVSaRENHFIRYCKQYQQGVWAVVDVSLDHLCPSS-SSTTRRSRRRPSGCLIQELQNGCSKVTWVEHVE 421
                     *********************************************************9998.9******************************** PP

                     --SSXX..HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 172 lkgrlp..hwllrslvksglaegaktwvatlqrqcek 206
                     ++++++   + ++sl+ sgla+ga +wva l+rqce+
  XP_004496853.1 422 VDESTVasNQSYKSLITSGLAFGAIRWVASLDRQCER 458
                     ******999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-1840105IPR009057Homeodomain-like
SuperFamilySSF466893.47E-1741109IPR009057Homeodomain-like
PROSITE profilePS5007116.3951111IPR001356Homeobox domain
SMARTSM003892.9E-1653115IPR001356Homeobox domain
CDDcd000861.13E-1554112No hitNo description
PfamPF000469.4E-1655109IPR001356Homeobox domain
PROSITE profilePS5084840.8225461IPR002913START domain
SuperFamilySSF559613.71E-32231459No hitNo description
CDDcd088751.35E-93231457No hitNo description
SMARTSM002341.9E-49234458IPR002913START domain
PfamPF018526.5E-46236458IPR002913START domain
Gene3DG3DSA:3.30.530.202.5E-8327457IPR023393START-like domain
SuperFamilySSF559613.02E-18505704No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 713 aa     Download sequence    Send to blast
MCYSKSKVRH PQPQKQQLTT SSTSDSERTN ENEDSGNEAP PSTEDQNHNK QPKKRVYKRH  60
TQPQIREMEA FFKNNPHPDE RQRKQLGREL GLGPMQIKFW FQNKRTQMKV QMERQEKYFL  120
KEENERLRAE IEMYKEAINK ATCPKCECHF CVDGMSFHEY HHLKMIEYAR LKAQAQMMAG  180
TVPIDVGNHE GCSYSNIGQM SAPSFEVGSG SGNYSNSIMI EEMRVDSNNL MIVELAVVAM  240
EELTTLALAG SPLWIPSNYK EILNEAEYTR FFPNNVIGPK LIGLKSEASR ESVTVPMNSI  300
NLIEVLMDVN QWSTMFYGIV SNAMTIDVLS PGVSGNYNGA LQVMSADFQV PSPLVSAREN  360
HFIRYCKQYQ QGVWAVVDVS LDHLCPSSSS TTRRSRRRPS GCLIQELQNG CSKVTWVEHV  420
EVDESTVASN QSYKSLITSG LAFGAIRWVA SLDRQCERLA ISMTINIPPA ADHFAMNSLQ  480
RRKSLMRLTD RMKVYFSTVA GSSIPNCWEV LTSNSNDVRV MIKRSIREPG TNTGSGLILS  540
AGTSLWLPVL PKRLFDFLRS QNSRSEWDII SIGGIIQEMA HIPNGQDPAN CVSLIRVKSA  600
DCSQNNMVLL QENSTDSTGS YVIYAPVDYG AMNVVMNGGD PDCVVMLPSG FVILPDGVPL  660
NNGGGCLLTI SFQILIDSNP NATIQNGSVQ SVIGLIKNTV ERIKIALAFD RTP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in cell specification and pattern formation during embryogenesis. Binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to PDF2. {ECO:0000269|PubMed:11439135, ECO:0000269|PubMed:12505995}.
UniProtProbable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269|PubMed:12505995}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004496853.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004496853.10.0homeobox-leucine zipper protein MERISTEM L1-like
SwissprotQ8RWU40.0ATML1_ARATH; Homeobox-leucine zipper protein MERISTEM L1
SwissprotQ93V990.0PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2
TrEMBLA0A1S2XZ980.0A0A1S2XZ98_CICAR; homeobox-leucine zipper protein MERISTEM L1-like
STRINGXP_004496853.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0protodermal factor 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Takada S,Takada N,Yoshida A
    Induction of epidermal cell fate in Arabidopsis shoots.
    Plant Signal Behav, 2013. 8(11): p. e26236
    [PMID:23989220]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Liang Z,Brown RC,Fletcher JC,Opsahl-Sorteberg HG
    Calpain-Mediated Positional Information Directs Cell Wall Orientation to Sustain Plant Stem Cell Activity, Growth and Development.
    Plant Cell Physiol., 2015. 56(9): p. 1855-66
    [PMID:26220906]
  5. Katagiri Y, et al.
    The coordination of ploidy and cell size differs between cell layers in leaves.
    Development, 2016. 143(7): p. 1120-5
    [PMID:26903507]
  6. Seeliger I, et al.
    The AP2-type transcription factors DORNRÖSCHEN and DORNRÖSCHEN-LIKE promote G1/S transition.
    Mol. Genet. Genomics, 2016. 291(5): p. 1835-49
    [PMID:27277595]
  7. Schwarz EM,Roeder AH
    Transcriptomic Effects of the Cell Cycle Regulator LGO in Arabidopsis Sepals.
    Front Plant Sci, 2016. 7: p. 1744
    [PMID:27920789]
  8. Meyer HM, et al.
    Fluctuations of the transcription factor ATML1 generate the pattern of giant cells in the Arabidopsis sepal.
    Elife, 2018.
    [PMID:28145865]