PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

WRKY

Protein Properties

Length: 298aa MW: 33495.6 Da PI: 5.6552

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004496517.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.4	1.9e-30	175	233	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers+++ +++++tY+g+H+h+ XP_004496517.1 175 ADLWAWRKYGQKPIKGSPYPRNYYRCSSSkGCTARKQVERSNSEAEMFIVTYTGDHTHP 233 699**********************998**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.5E-30	164	235	IPR003657	WRKY domain
SuperFamily	SSF118290	5.49E-26	169	235	IPR003657	WRKY domain
PROSITE profile	PS50811	32.26	169	235	IPR003657	WRKY domain
SMART	SM00774	3.7E-37	174	234	IPR003657	WRKY domain
Pfam	PF03106	5.9E-26	176	233	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007263	Biological Process	nitric oxide mediated signal transduction
GO:0009739	Biological Process	response to gibberellin
GO:0042742	Biological Process	defense response to bacterium
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MDEDWDLFAI VRSCQSPTNT TTKENPFTTT NKTTQSSISS SNFKVELEYE AFSFPNIVQP 60 IANEIQELNQ LFTSFNPTTT NTTTTTTSDN GINPNSPNNI ARSIGQQQHH LPSTNWPPFV 120 QETQQLQQQK QEFQVLQNNS SIVFPNTQPQ TPRSRKRKSQ QGKMVCHVTA DNLSADLWAW 180 RKYGQKPIKG SPYPRNYYRC SSSKGCTARK QVERSNSEAE MFIVTYTGDH THPRPTHRNS 240 LAGSTRTKSP AMLLSTSTSS QSNTITSPSS SSSAPYSLVE EEEDMDMEIE TDEEADDT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	2e-20	175	236	17	80	Disease resistance protein RRS1
5w3x_D	2e-20	175	236	17	80	Disease resistance protein RRS1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	153	158	SRKRKS

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00561	DAP	Transfer from AT5G52830	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004496517.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC148655	7e-41	AC148655.4 Medicago truncatula clone mth2-61c11, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004496517.1	0.0	probable WRKY transcription factor 27
TrEMBL	A0A1S2XZU1	0.0	A0A1S2XZU1_CICAR; probable WRKY transcription factor 27
STRING	XP_004496517.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6794	32	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52830.1	5e-55	WRKY DNA-binding protein 27