PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

Trihelix

Protein Properties

Length: 578aa MW: 66180.5 Da PI: 6.468

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004496472.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	95.2	6e-30	49	133	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW++qe+laL+++r++m+ +r+++lk+plWeevs+k++e g++r++k+Ckek+en+ k++k++keg+++++se +t+++fdql+ XP_004496472.1 49 RWPRQETLALLKIRSDMDGVFRDSSLKGPLWEEVSRKLAELGYHRNAKKCKEKFENVYKYHKRTKEGKSGKKSEG-KTYRFFDQLQ 133 8******************************************************************985555.69****98 PP
2	trihelix	101.5	6.9e-32	389	474	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k+ev+aLi++r+++e +++++ k+plWe++s+ m++ g++r++k+Ckekwen+nk+ykk+ke++k+r + s+tcpyf++lea XP_004496472.1 389 RWPKSEVHALIRIRTSLEPKYQENGPKAPLWEDISAGMQRLGYNRNSKRCKEKWENINKYYKKMKESNKQR-RDGSKTCPYFNELEA 474 8*******************************************************************8.67778*****985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.1	46	108	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	6.737	48	106	IPR017877	Myb-like domain
Pfam	PF13837	1.5E-19	48	135	No hit	No description
CDD	cd12203	1.82E-22	48	113	No hit	No description
SMART	SM00717	1.2	386	448	IPR001005	SANT/Myb domain
Pfam	PF13837	2.4E-22	388	475	No hit	No description
PROSITE profile	PS50090	6.946	388	446	IPR017877	Myb-like domain
CDD	cd12203	1.68E-25	388	453	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 578 aa Download sequence Send to blast
MELGDATVMD SSSGEIVAPE VHDGGDEKGR NGGEEDDKMM NITGSGGNRW PRQETLALLK 60 IRSDMDGVFR DSSLKGPLWE EVSRKLAELG YHRNAKKCKE KFENVYKYHK RTKEGKSGKK 120 SEGKTYRFFD QLQALEKQFS LSSYPPTSKP QPNNNIVSLP TKPNNTTTIS HVPSTNPTTL 180 ISPSPPPPLP PPTNATTTPT LTNNKNNNNV QYSLPNMNLF STTTTSTSSS TASDEDLEEK 240 YRKKRKWKDY FRRLTREVLI KQEEMQKKFL EAIDKREREH MAQQDAWRVQ EMNRINKEHE 300 LLVQERSTTA AKNAAVIAFL QKLSGQQNST IQDNFIQPPP PPQPTPPESA QTPISQLQIQ 360 PHEPVTSNNN IVEIHQNNGH KSGGGASSRW PKSEVHALIR IRTSLEPKYQ ENGPKAPLWE 420 DISAGMQRLG YNRNSKRCKE KWENINKYYK KMKESNKQRR DGSKTCPYFN ELEALYKEKN 480 KTFHNNIIKS SEMMEPLMVQ PEQQWRPPTT ITTTQYDEEE KKKKNSNEVE AKEEDYDDND 540 DDEYDEGDSM EEEEEDEGGV NSRYEVMTNK LSPVDTVE

Sequence ? help Back to Top

Protein Sequence Length: 578 aa Download sequence Send to blast

MELGDATVMD SSSGEIVAPE VHDGGDEKGR NGGEEDDKMM NITGSGGNRW PRQETLALLK  60
IRSDMDGVFR DSSLKGPLWE EVSRKLAELG YHRNAKKCKE KFENVYKYHK RTKEGKSGKK  120
SEGKTYRFFD QLQALEKQFS LSSYPPTSKP QPNNNIVSLP TKPNNTTTIS HVPSTNPTTL  180
ISPSPPPPLP PPTNATTTPT LTNNKNNNNV QYSLPNMNLF STTTTSTSSS TASDEDLEEK  240
YRKKRKWKDY FRRLTREVLI KQEEMQKKFL EAIDKREREH MAQQDAWRVQ EMNRINKEHE  300
LLVQERSTTA AKNAAVIAFL QKLSGQQNST IQDNFIQPPP PPQPTPPESA QTPISQLQIQ  360
PHEPVTSNNN IVEIHQNNGH KSGGGASSRW PKSEVHALIR IRTSLEPKYQ ENGPKAPLWE  420
DISAGMQRLG YNRNSKRCKE KWENINKYYK KMKESNKQRR DGSKTCPYFN ELEALYKEKN  480
KTFHNNIIKS SEMMEPLMVQ PEQQWRPPTT ITTTQYDEEE KKKKNSNEVE AKEEDYDDND  540
DDEYDEGDSM EEEEEDEGGV NSRYEVMTNK LSPVDTVE

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specific DNA sequence. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00244	DAP	Transfer from AT1G76890	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004496472.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC225546	1e-114	AC225546.4 Medicago truncatula clone mth2-78i17, complete sequence.
GenBank	BT149534	1e-114	BT149534.1 Medicago truncatula clone JCVI-FLMt-19J11 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004496472.1	0.0	trihelix transcription factor GT-2-like
Swissprot	Q39117	1e-139	TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBL	A0A1S2XYC3	0.0	A0A1S2XYC3_CICAR; trihelix transcription factor GT-2-like
STRING	XP_004496472.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF373	34	181

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	5e-79	Trihelix family protein