PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_004496354.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

GRAS

Protein Properties

Length: 459aa MW: 52782 Da PI: 6.5246

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004496354.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	293.7	4.9e-90	75	457	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l++lLl+ A+ v+++++ + L+ l +++s +gd+++R++ayft +L a+l++ s y+ + ++t +ee+ a++ ++ vsP+++f+h XP_004496354.1 75 LIHLLLTTATLVDNNNFDSSLTNLTDLYKNVSLTGDSVERVVAYFTDGLTAKLLSRKSPFYDMVMEEPT----IDEEFLAFTDLYRVSPYFQFAH 165 689**************************************************99999987766666....7999999999******** PP GRAS 96 ltaNqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeel.gvpfefnvlv 182 +taNqaIlea+e+e + +H+iDfd+s+G+QWp+L+q+L++++ ++ slR+T +g+ + +el+et++rL +f + + ++ fef+ l XP_004496354.1 166 FTANQAILEAFEKEeeknnRSIHVIDFDVSYGFQWPSLIQSLSEKAtsGNRISLRLTCFGK----NLKELQETESRLVSFSKGFgNLVFEFQGL- 255 ********9988877889******************99755566*****....99***********99459**8. PP GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleaklp 276 l ++ +Lr k++E++aVnlv l +l + + ++++L +v sl+P +vv+veqe ++ + +Fl rf+++l+y++a+fdsl+ lp XP_004496354.1 256 ---LRGSRVINLRKKKNETVAVNLVSYLNTLS----CFMK-ISDTLGFVHSLNPSIVVLVEQEGSRnPNRNFLSRFTDSLHYFAAMFDSLDDCLP 342 ...77778899***********999997....3333.578*****************955789******************** PP GRAS 277 reseerikvErellgreivnvvace...gae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkv........ksdg...yrveee.s 355 +s er +E+++lg+ei++++ g+e ++ e++e+W++r+e+ GF ++s+ka+ qaklll++ +++g +rv e+ + XP_004496354.1 343 LDSIERLRIEKKVLGKEIKSMLNYDvegGFElDCHKYEKMETWKARMENHGFVGTKISSKAMIQAKLLLKMRthycplqfEEEGgggFRVSERdD 437 *****************9865111455556799****************************98522222211222233488876545 PP GRAS 356 gslv.lgWkdrpLvsvSaWr 374 g ++ lgW++r L++vSaW+ XP_004496354.1 438 GRAIsLGWQNRFLITVSAWQ 457 66667************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	45.314	49	424	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.7E-87	75	457	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 459 aa Download sequence Send to blast
MEDSEEDELL NLSLSVSSNK ERKKKGKNIT NNIRNSYEGY EAKIFRVLQM REQMIRQDHR 60 RKSVVNEDHE NGLPLIHLLL TTATLVDNNN FDSSLTNLTD LYKNVSLTGD SVERVVAYFT 120 DGLTAKLLSR KSPFYDMVME EPTIDEEFLA FTDLYRVSPY FQFAHFTANQ AILEAFEKEE 180 EKNNRSIHVI DFDVSYGFQW PSLIQSLSEK ATSGNRISLR LTCFGKNLKE LQETESRLVS 240 FSKGFGNLVF EFQGLLRGSR VINLRKKKNE TVAVNLVSYL NTLSCFMKIS DTLGFVHSLN 300 PSIVVLVEQE GSRNPNRNFL SRFTDSLHYF AAMFDSLDDC LPLDSIERLR IEKKVLGKEI 360 KSMLNYDVEG GFELDCHKYE KMETWKARME NHGFVGTKIS SKAMIQAKLL LKMRTHYCPL 420 QFEEEGGGGF RVSERDDGRA ISLGWQNRFL ITVSAWQSL

Sequence ? help Back to Top

Protein Sequence Length: 459 aa Download sequence Send to blast

MEDSEEDELL NLSLSVSSNK ERKKKGKNIT NNIRNSYEGY EAKIFRVLQM REQMIRQDHR  60
RKSVVNEDHE NGLPLIHLLL TTATLVDNNN FDSSLTNLTD LYKNVSLTGD SVERVVAYFT  120
DGLTAKLLSR KSPFYDMVME EPTIDEEFLA FTDLYRVSPY FQFAHFTANQ AILEAFEKEE  180
EKNNRSIHVI DFDVSYGFQW PSLIQSLSEK ATSGNRISLR LTCFGKNLKE LQETESRLVS  240
FSKGFGNLVF EFQGLLRGSR VINLRKKKNE TVAVNLVSYL NTLSCFMKIS DTLGFVHSLN  300
PSIVVLVEQE GSRNPNRNFL SRFTDSLHYF AAMFDSLDDC LPLDSIERLR IEKKVLGKEI  360
KSMLNYDVEG GFELDCHKYE KMETWKARME NHGFVGTKIS SKAMIQAKLL LKMRTHYCPL  420
QFEEEGGGGF RVSERDDGRA ISLGWQNRFL ITVSAWQSL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	4e-50	83	456	27	378	Protein SCARECROW
5b3h_A	4e-50	83	456	26	377	Protein SCARECROW
5b3h_D	4e-50	83	456	26	377	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004496354.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004496354.1	0.0	scarecrow-like protein 18
TrEMBL	A0A1S2XZZ9	0.0	A0A1S2XZZ9_CICAR; scarecrow-like protein 18
STRING	XP_004496354.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6200	29	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14920.1	9e-53	GRAS family protein