PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004496332.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

LBD

Protein Properties

Length: 231aa MW: 25341.2 Da PI: 6.9698

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004496332.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	135.1	2.6e-42	74	173	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++k+l++lpe +r da+ss+vyeA+ar+rdPvyG++g i +lq+q+++l+++la XP_004496332.1 74 PCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPEPQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVSELQTQLA 168 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_004496332.1 169 KAQAE 173 *9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.992	73	174	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.4E-42	74	171	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005739	Cellular Component	mitochondrion

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MEQLKVKTTT SPPYLPIPIH VPIHTMFSNS PPSSSSSPPS QSPTPFPSPP SQSSPPNLAT 60 PQPPSPPPPI VVSPCAACKI LRRRCVEKCV LAPYFPPTDP LKFTIAHRVF GASNIIKFLQ 120 ELPEPQRADA VSSMVYEANA RIRDPVYGCA GAICQLQKQV SELQTQLAKA QAELVNMHCQ 180 QANLVALICM EMSQSQQDHN NMIIQPQPNV DMSCFLEDNN SFGSAWEPLW T

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-43	65	181	2	118	LOB family transfactor Ramosa2.1
5ly0_B	6e-43	65	181	2	118	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004496332.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC144484	1e-117	AC144484.5 Medicago truncatula clone mth2-30o16, complete sequence.
GenBank	AC152818	1e-117	AC152818.17 Medicago truncatula clone mth2-85g12, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004496332.1	1e-168	LOB domain-containing protein 1-like
Swissprot	Q9LQR0	5e-76	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	A0A1S2XZY5	1e-166	A0A1S2XZY5_CICAR; LOB domain-containing protein 1-like
STRING	XP_004496332.1	1e-167	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1303	34	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	2e-74	LOB domain-containing protein 1