 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
XP_004496332.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
|
| Family |
LBD |
| Protein Properties |
Length: 231aa MW: 25341.2 Da PI: 6.9698 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_004496332.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 135.1 | 2.6e-42 | 74 | 173 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95
+CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++k+l++lpe +r da+ss+vyeA+ar+rdPvyG++g i +lq+q+++l+++la
XP_004496332.1 74 PCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPEPQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVSELQTQLA 168
7********************************************************************************************** PP
DUF260 96 llkee 100
++++e
XP_004496332.1 169 KAQAE 173
*9987 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 231 aa
Download sequence Send
to blast |
MEQLKVKTTT SPPYLPIPIH VPIHTMFSNS PPSSSSSPPS QSPTPFPSPP SQSSPPNLAT 60
PQPPSPPPPI VVSPCAACKI LRRRCVEKCV LAPYFPPTDP LKFTIAHRVF GASNIIKFLQ 120
ELPEPQRADA VSSMVYEANA RIRDPVYGCA GAICQLQKQV SELQTQLAKA QAELVNMHCQ 180
QANLVALICM EMSQSQQDHN NMIIQPQPNV DMSCFLEDNN SFGSAWEPLW T
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC144484 | 1e-117 | AC144484.5 Medicago truncatula clone mth2-30o16, complete sequence. |
| GenBank | AC152818 | 1e-117 | AC152818.17 Medicago truncatula clone mth2-85g12, complete sequence. |
