PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004496271.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family GATA
Protein Properties Length: 345aa    MW: 37419.1 Da    PI: 5.6925
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004496271.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.11e-17251284134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C +C  tkTp+WR gp g+ktLCnaCG++y++ +
  XP_004496271.1 251 CMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 284
                     99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.6E-773338IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.477245281IPR000679Zinc finger, GATA-type
SMARTSM004011.4E-16245295IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.76E-14249308No hitNo description
Gene3DG3DSA:3.30.50.109.4E-15249282IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.26E-14250297No hitNo description
PfamPF003202.4E-15251284IPR000679Zinc finger, GATA-type
PROSITE patternPS003440251276IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MVGPNFMDEL DCGSFFDQID DLLDFPVDDV DTANASLPSV ASAGNCNSLA SIWPSESHSF  60
PASDSVFSGN SASDLSAELS VPYEDIVQLE WLSNFVEDSF SEGSLTMKKI EQQPSSCATK  120
EDSVHNQFQT SSPVSVLESS SSSSGGKTTG IYIPVPCGRA RTKRPRPATF NPRSAMQLIS  180
PTSSFVGENM QPNVISTKAS LEFENVVESQ IVGKKPKLAS GESKKKKKMK MPLPAAPADS  240
NQDASQPIRK CMHCEITKTP QWRAGPMGPK TLCNACGVRY KSGRLFPEYR PAASPTFCPS  300
LHSNSHKKVL EMRCKDIENS GFESHSAASP ELIPNTNNIL TLEYM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1162166KRPRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004496271.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004496271.10.0GATA transcription factor 8
RefseqXP_004496272.10.0GATA transcription factor 8
RefseqXP_012570064.10.0GATA transcription factor 8
TrEMBLA0A1S2XZA70.0A0A1S2XZA7_CICAR; GATA transcription factor
STRINGXP_004496271.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48873356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.22e-43GATA family protein