PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004496221.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

bHLH

Protein Properties

Length: 533aa MW: 59268.1 Da PI: 6.9722

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004496221.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11	0.00078	426	458	18	55
HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 18 safeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ L++++ + +K + a++L +A+ YIk Lq XP_004496221.1 426 EKITALQQIVSPF-----GKTDTASVLFEAIGYIKFLQ 458 5777888888887.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.931	408	457	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-7	423	465	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.01E-9	423	472	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.87E-4	426	462	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 533 aa Download sequence Send to blast
MSGECGGNTI ATSTTPLNWW YLQTNSLSSN WNDVKHAWNN NQMNPNSSSS CEDQDISVSS 60 TSFTNASNHS TLTVESSRRV FVDQPHAPSS NDFMAQHASD NQLWSHVLSG VGTNGELHNN 120 QEIGENFLDA LSSKTMFEPA CDYLKKLDTS WEYSNPTSFN SNFEKHLNGY SEALIENNER 180 LTKLSNLVST WSIAPPDPEV SSQFDPQTNN MSNNLNSSSM NHHFSQSNPS CLFKPPFDDS 240 TSCTIVDQGV GNKNSGSILF PNICHDDDHD MKVKQEFNHH HASEVMHGHV FGKSFNPNGY 300 LDGFNNSVNS VGESGKFYQG LSNNISPCTK NFSDVISFNS RFGRPVIGIH AQRPNIKYSS 360 NLSESKKQSL HSSSHMRNSN GRGEGTTREI KKKRSEESSE ASLKKTKQDT STTNSSSKAP 420 KVKLGEKITA LQQIVSPFGK TDTASVLFEA IGYIKFLQEQ VQLLSNPYLK ANSHKDPRGI 480 SCFDRKDHKE DGKMDLRSRG LCLVPTSCTP LVYRENSTGP DYWTPAYRGC LYR

Sequence ? help Back to Top

Protein Sequence Length: 533 aa Download sequence Send to blast

MSGECGGNTI ATSTTPLNWW YLQTNSLSSN WNDVKHAWNN NQMNPNSSSS CEDQDISVSS  60
TSFTNASNHS TLTVESSRRV FVDQPHAPSS NDFMAQHASD NQLWSHVLSG VGTNGELHNN  120
QEIGENFLDA LSSKTMFEPA CDYLKKLDTS WEYSNPTSFN SNFEKHLNGY SEALIENNER  180
LTKLSNLVST WSIAPPDPEV SSQFDPQTNN MSNNLNSSSM NHHFSQSNPS CLFKPPFDDS  240
TSCTIVDQGV GNKNSGSILF PNICHDDDHD MKVKQEFNHH HASEVMHGHV FGKSFNPNGY  300
LDGFNNSVNS VGESGKFYQG LSNNISPCTK NFSDVISFNS RFGRPVIGIH AQRPNIKYSS  360
NLSESKKQSL HSSSHMRNSN GRGEGTTREI KKKRSEESSE ASLKKTKQDT STTNSSSKAP  420
KVKLGEKITA LQQIVSPFGK TDTASVLFEA IGYIKFLQEQ VQLLSNPYLK ANSHKDPRGI  480
SCFDRKDHKE DGKMDLRSRG LCLVPTSCTP LVYRENSTGP DYWTPAYRGC LYR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004496221.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004496221.1	0.0	transcription factor bHLH133 isoform X2
TrEMBL	A0A1S2XZR2	0.0	A0A1S2XZR2_CICAR; transcription factor bHLH133 isoform X2
STRING	XP_004496220.1	0.0	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31050.1	5e-43	bHLH family protein