PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004495894.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family WRKY
Protein Properties Length: 319aa    MW: 35941.9 Da    PI: 6.8515
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004495894.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.91e-33163220259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dgy+WrKYGqK vk+s+fprsYYrCt+ +C+vkk+vers +dp++v++tYeg+H+h+
  XP_004495894.1 163 EDGYRWRKYGQKAVKNSPFPRSYYRCTTVSCNVKKRVERSFTDPTIVVTTYEGQHTHQ 220
                     8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381301.1E-1251319IPR017396PWRKY transcription factor, group IIc
Gene3DG3DSA:2.20.25.802.0E-34147222IPR003657WRKY domain
SuperFamilySSF1182904.97E-29154222IPR003657WRKY domain
PROSITE profilePS5081131.238157222IPR003657WRKY domain
SMARTSM007743.6E-39162221IPR003657WRKY domain
PfamPF031061.0E-25163220IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0009733Biological Processresponse to auxin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MEKKENMGVS VKGEDVVDSS SYLVNSYNQF SSVFDFCEVE KSSLGFMELL GVQNYSPLLD  60
LPQLSTMSVM THDTLKAPSA DTGKEYSEVL NQQPATPNSC SISSASSEAL NDEHNKTLLD  120
QHEDEEDEKQ KINKQLKTKK TNQKRQREPR FAFMTKSEVD HLEDGYRWRK YGQKAVKNSP  180
FPRSYYRCTT VSCNVKKRVE RSFTDPTIVV TTYEGQHTHQ SPAMCRSGFA GAQIPPPAGG  240
RFSTNFGSVL QGNFLSSSQF QQQHYQHQQL LVNTLSSLAL PYNNSSSSSK NSTFTQESSF  300
LRDHGLLQDV VPSHMLKEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-30152223778Probable WRKY transcription factor 4
2lex_A8e-30152223778Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00069PBMTransfer from AT2G47260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004495894.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004495894.10.0WRKY transcription factor 23-like
SwissprotO229003e-71WRK23_ARATH; WRKY transcription factor 23
TrEMBLA0A1S2XZ070.0A0A1S2XZ07_CICAR; WRKY transcription factor
STRINGXP_004495894.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100234114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47260.13e-55WRKY DNA-binding protein 23
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Guo D,Qin G
    EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses.
    Plant Signal Behav, 2016. 11(3): p. e1150404
    [PMID:26914912]
  4. Prát T, et al.
    WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity.
    PLoS Genet., 2018. 14(1): p. e1007177
    [PMID:29377885]