PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

MYB

Protein Properties

Length: 428aa MW: 48410 Da PI: 6.6652

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004495851.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.5	2.8e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l++ ++++G g+W+++++ g+ R++k+c++rw +yl XP_004495851.1 14 KGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYL 61 678*******************************************97 PP
2	Myb_DNA-binding	44.8	2.9e-14	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg ++++E+ l++++++ lG++ W+ Ia+ ++ gRt++++k+ w++ XP_004495851.1 67 RGTFSQDEENLIIELHAVLGNR-WSQIAAQLP-GRTDNEIKNLWNS 110 899*****************.*****.*********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.3E-28	6	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	18.926	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	3.67E-29	12	108	IPR009057	Homeodomain-like
SMART	SM00717	2.7E-13	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	3.2E-15	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	2.06E-11	17	61	No hit	No description
PROSITE profile	PS51294	25.357	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.3E-25	65	116	IPR009057	Homeodomain-like
SMART	SM00717	7.3E-13	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	3.5E-13	67	111	IPR001005	SANT/Myb domain
CDD	cd00167	1.07E-8	69	109	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence Send to blast
MGRHSCCYKQ KLRKGLWSPE EDEKLLRHIT KYGHGCWSSV PKQAGLQRCG KSCRLRWINY 60 LRPDLKRGTF SQDEENLIIE LHAVLGNRWS QIAAQLPGRT DNEIKNLWNS CLKKKLRQKG 120 IDPVTHKPLS EVENLEDNVK SQEKVAQVSN ELNLLKSESS KSDAASCDHR TSTSLSPKAY 180 AQEMDGSGSY TKSESSNLMN SKDMFLDKFM NHQTDLMANF PLQMSFSNTE NDCLTNDSNS 240 SHWFNQTGKT FDMNSEFPFN SNSILTPTTT TSTTTMFLPN SFCCNDSSLA TIHSDNVSTP 300 CGSNYWEVNR SDNRSNNSST LNLQNNIFSS WGLADCSINS TKEAQIHDMI EHNHAEEEAK 360 WENNYLHNPI LMLASESLCN EIKPSMMQLV PHDTLGAILP HTKQQEQSQA SNIFSKDIQK 420 LRAAFGDM

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence Send to blast

MGRHSCCYKQ KLRKGLWSPE EDEKLLRHIT KYGHGCWSSV PKQAGLQRCG KSCRLRWINY  60
LRPDLKRGTF SQDEENLIIE LHAVLGNRWS QIAAQLPGRT DNEIKNLWNS CLKKKLRQKG  120
IDPVTHKPLS EVENLEDNVK SQEKVAQVSN ELNLLKSESS KSDAASCDHR TSTSLSPKAY  180
AQEMDGSGSY TKSESSNLMN SKDMFLDKFM NHQTDLMANF PLQMSFSNTE NDCLTNDSNS  240
SHWFNQTGKT FDMNSEFPFN SNSILTPTTT TSTTTMFLPN SFCCNDSSLA TIHSDNVSTP  300
CGSNYWEVNR SDNRSNNSST LNLQNNIFSS WGLADCSINS TKEAQIHDMI EHNHAEEEAK  360
WENNYLHNPI LMLASESLCN EIKPSMMQLV PHDTLGAILP HTKQQEQSQA SNIFSKDIQK  420
LRAAFGDM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	5e-28	12	116	5	108	B-MYB
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	111	117	LKKKLRQ

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00427	DAP	Transfer from AT4G01680	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004495851.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT052849	1e-114	BT052849.1 Medicago truncatula clone MTYFL_FM_FN_FO1G-P-4 unknown mRNA.
GenBank	BT147477	1e-114	BT147477.1 Medicago truncatula clone JCVI-FLMt-12D24 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004495851.1	0.0	transcription factor MYB61
TrEMBL	A0A1S2XYD6	0.0	A0A1S2XYD6_CICAR; transcription factor MYB61
STRING	XP_004495851.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1083	33	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01680.3	1e-93	myb domain protein 55