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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004495133.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | WRKY | ||||||||
Protein Properties | Length: 351aa MW: 39719.9 Da PI: 10.2828 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 99.2 | 2.6e-31 | 285 | 343 | 3 | 60 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 D y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ e+p+++++tYegeHnh+k XP_004495133.1 285 DDYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEEPTMLIVTYEGEHNHPK 343 99***********************9988****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 4.3E-17 | 236 | 281 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 1.9E-33 | 271 | 343 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.998 | 278 | 344 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.1E-27 | 281 | 343 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.7E-38 | 283 | 343 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.4E-27 | 285 | 342 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence Send to blast |
MEEIEQANRT AVESCHRVLS MLSQPRDQVH HRNLMLETGE AVNRFKKVVS LLHNGLGHAR 60 VRKFKKHQQF PFSQTQTIFL DNPICKTNTK NLHFPQTNYP LENSSNPELA LTIRNPLSLG 120 NSSLELSTNG KSPLHLAQQA ASNHYHFIQQ QQQQRLLLQQ QQQQQQMKHQ AEMMFRRSTS 180 GINLNFDNTS CTPTMSSTRS FISSLSIDGS VANLDGSSFH LIGAPHSSDQ NSQQHKRKCS 240 ARGDEGSLKC GSSSKCHCSK KRKHRVKRSI KVPAISNKLA DIPPDDYSWR KYGQKPIKGS 300 PHPRGYYKCS SMRGCPARKH VERCLEEPTM LIVTYEGEHN HPKLPTQPAN A |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 4e-20 | 279 | 345 | 10 | 75 | WRKY transcription factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00284 | DAP | Transfer from AT2G30590 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004495133.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004495133.2 | 0.0 | LOW QUALITY PROTEIN: probable WRKY transcription factor 21 | ||||
Swissprot | O04336 | 1e-125 | WRK21_ARATH; Probable WRKY transcription factor 21 | ||||
TrEMBL | A0A1S2XVJ2 | 0.0 | A0A1S2XVJ2_CICAR; LOW QUALITY PROTEIN: probable WRKY transcription factor 21 | ||||
STRING | XP_004495133.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2637 | 34 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28650.1 | 3e-80 | WRKY DNA-binding protein 74 |