 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
XP_004495114.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
|
| Family |
LBD |
| Protein Properties |
Length: 229aa MW: 25609.4 Da PI: 5.2274 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_004495114.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 124.3 | 6.2e-39 | 9 | 109 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94
+C aCk+lrrkC ++Cv+apyf++eq + +fa++hk+FGasnv+kll++lp ++r +a+ ++ yeA+ar++dP+yG+v++i++lqqq+ +l+++l
XP_004495114.1 9 PCGACKFLRRKCIRGCVFAPYFCHEQgATHFAAIHKVFGASNVSKLLAHLPLTDRCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVVNLQTQL 103
7*************************89******************************************************************* PP
DUF260 95 allkee 100
a+lke+
XP_004495114.1 104 AYLKEQ 109
**9987 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 229 aa
Download sequence Send
to blast |
MSGSVSGSPC GACKFLRRKC IRGCVFAPYF CHEQGATHFA AIHKVFGASN VSKLLAHLPL 60
TDRCEAAVTI SYEAQARLQD PIYGCVSHIF ALQQQVVNLQ TQLAYLKEQA EAQTCLLNNE 120
KSTSLNLPQQ DLQGWFQMQN SNNYQLGQEF LTNNLSNISS ATQYYGNNTL MNVDPTRNYE 180
NSGIIEENSS FSSFEESTSN SMSYDMQTNR RTWGFDEVED LHSVAFGYS
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19. {ECO:0000269|PubMed:17259263}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:17259263}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015041 | 9e-92 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
| Publications
? help Back to Top |
- Gupta A,Singh M,Laxmi A
Interaction between glucose and brassinosteroid during the regulation of lateral root development in Arabidopsis.
Plant Physiol., 2015. 168(1): p. 307-20
[PMID:25810094] - Porco S, et al.
Lateral root emergence in Arabidopsis is dependent on transcription factor LBD29 regulation of auxin influx carrier LAX3.
Development, 2016. 143(18): p. 3340-9
[PMID:27578783] - Lee K,Seo PJ
High-temperature promotion of callus formation requires the BIN2-ARF-LBD axis in Arabidopsis.
Planta, 2017. 246(4): p. 797-802
[PMID:28766014] - Xu C,Cao H,Xu E,Zhang S,Hu Y
Genome-Wide Identification of Arabidopsis LBD29 Target Genes Reveals the Molecular Events behind Auxin-Induced Cell Reprogramming during Callus Formation.
Plant Cell Physiol., 2018. 59(4): p. 744-755
[PMID:29121271] - Xu C, et al.
Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
Nat Plants, 2018. 4(2): p. 108-115
[PMID:29358751]
|
