PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004494878.1 | ||||||||
Common Name | LHY | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | MYB_related | ||||||||
Protein Properties | Length: 756aa MW: 82814.8 Da PI: 5.9931 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49 | 1.4e-15 | 25 | 69 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT++E+ ++++a k++G W +I +++g ++t+ q++s+ qk+ XP_004494878.1 25 RERWTEDEHNRFLEALKLYGRA-WQRIEEHIG-TKTAVQIRSHAQKF 69 78******************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.64E-16 | 19 | 75 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.501 | 20 | 74 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 7.1E-17 | 23 | 72 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 2.3E-12 | 24 | 72 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.2E-13 | 25 | 68 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.1E-8 | 25 | 65 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.98E-9 | 27 | 70 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0042754 | Biological Process | negative regulation of circadian rhythm | ||||
GO:0043433 | Biological Process | negative regulation of sequence-specific DNA binding transcription factor activity | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0048574 | Biological Process | long-day photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 756 aa Download sequence Send to blast |
MMEAYSSGEE VVVKTRKPYT ITKQRERWTE DEHNRFLEAL KLYGRAWQRI EEHIGTKTAV 60 QIRSHAQKFF SKLEKEALVK GAAIGQSLNI DIPPPRPKRK PSNPYPRKTN VGAPTLHSGA 120 KYGKPLTAFA SLHGKEAMDF EKESLPEMHT DDERPTTVKE NNDENCSKVC TILQEAPCLS 180 VSSANKSSIS MSVPQTKSFT FREFIPLVKE VIPQDKTNES FPATETENQM LEIGDGKQTQ 240 KTDGTCKTSK LENTCSPKSV QTEKTDGLTY ASTVDEMQGN QNYPRHITVH VVDGNLGTST 300 QTPSQDMLIQ DSIFQPIGGI NGQPNLFTNS AASNTSESQN NTARSSIHQS FPPCPLFAQH 360 NEDDYQSFLN MPSTFSSLIV STLLQHPAAH AAASFAATFW PYANVDTSAN SHACSQGGFP 420 SRQIGSPPSV TAIAAATVAA ATAWWAAHGL LPLCTPLHTA FACPPASATA VQPANIGEAP 480 PNTEQGDITL QNPSLKDQML GVEETEALQA QHSASKSPAV SSSESEETGD AKLNTSSKAT 540 TDHDISQPIS ENPDSNKMEG RKQVDRSSCG SNTTSSSEET DALEKGEKEK EDPKPPDADH 600 LATDPSSRRY RSISNFIDSW KEVSEEGRLA FRALFSRQVL PQSFSPPHDL INKDHQMGNM 660 TDNMQKTDYK DHLDSTKCSS NCDGFQQNLP FVQNNNEEEG LLTISLGQGK LKTRRTGFKP 720 YKRCLVEAKE NRVGTACNQV EEAGPKRIRL EGETST |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00119 | DAP | Transfer from AT1G01060 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004494878.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ558378 | 0.0 | KJ558378.1 Cicer arietinum LATE ELONGATED HYPOCOTYL (LHY) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004494878.1 | 0.0 | protein LHY isoform X1 | ||||
Refseq | XP_004494879.1 | 0.0 | protein LHY isoform X1 | ||||
Refseq | XP_004494880.1 | 0.0 | protein LHY isoform X1 | ||||
Refseq | XP_027188030.1 | 0.0 | protein LHY isoform X1 | ||||
TrEMBL | A0A1S2XUV9 | 0.0 | A0A1S2XUV9_CICAR; protein LHY isoform X1 | ||||
STRING | XP_004494878.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4860 | 25 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01060.4 | 1e-103 | MYB_related family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 101500635 |