PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004494477.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family WRKY
Protein Properties Length: 379aa    MW: 41832.5 Da    PI: 8.6258
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004494477.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.68.4e-31177235259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed++v+++tYeg+Hnh+
  XP_004494477.1 177 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDKTVLITTYEGKHNHP 235
                     7*********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.9E-34161237IPR003657WRKY domain
SuperFamilySSF1182905.23E-28169237IPR003657WRKY domain
PROSITE profilePS5081130.136171237IPR003657WRKY domain
SMARTSM007749.1E-37176236IPR003657WRKY domain
PfamPF031061.1E-26178235IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MENCNRELSF LTSNEFLRNN TDPPPIKEMD FFSSPSNTII KQRSPTVLLP PHSVNTGLNL  60
KCASAEVSKE ENPETELSRV EKELRRVQEE NQKLRVVLEQ ITKSYSQLQA QLFIAMHKQN  120
PHQACSNHHP AKEEVSERSS SNTISKLEEH SKTSDQEPPF RKARVSVRAR SEAPMISDGC  180
QWRKYGQKMA KGNPCPRAYY RCTMAVGCPV RKQVQRCAED KTVLITTYEG KHNHPLPPAA  240
TAMANTTSAA AAMLLSGSTL TKEYSTLPYL SSFIPYPTMP TLSPSQPFPT ITLDLTHQNI  300
LPLPLQGHPL FFSHKLPPPM ALPPSSLVDN VSAAISSDPN FTAALTAAIS SIINGPQRGS  360
VLPGSPQLHS QSCTTYSTN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-22167237877Probable WRKY transcription factor 4
2lex_A2e-22167237877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00115ampDAPTransfer from AT4G01720Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004494477.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004494477.10.0probable WRKY transcription factor 47 isoform X2
SwissprotQ9ZSI71e-81WRK47_ARATH; Probable WRKY transcription factor 47
TrEMBLA0A1S2XU300.0A0A1S2XU30_CICAR; probable WRKY transcription factor 47 isoform X2
STRINGXP_004494476.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01720.14e-72WRKY family protein