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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004494428.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | WRKY | ||||||||
Protein Properties | Length: 248aa MW: 28508.8 Da PI: 6.1124 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 93.9 | 1.2e-29 | 56 | 113 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D +WrKYGqK++kgs++pr+YYrC+ + gC++kk+vers++d ++++itY+++Hnh+ XP_004494428.1 56 DFGSWRKYGQKPIKGSPYPRGYYRCSASkGCSAKKQVERSSTDSSMLIITYTSTHNHP 113 5668**********************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 6.4E-30 | 45 | 115 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.217 | 49 | 115 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.05E-25 | 51 | 115 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.9E-33 | 54 | 114 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.0E-25 | 58 | 113 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MDNINDSPQH ESEPSNLELK PESQASKKRK MVEKRVVRVR VGENVSKLKN EGLPTDFGSW 60 RKYGQKPIKG SPYPRGYYRC SASKGCSAKK QVERSSTDSS MLIITYTSTH NHPDPTTLLQ 120 QPKQSKTKTI EEQEHIEEEM INSNNNKNKN KSTITNDQMT NEENYHYLQS PIDQEDPFKL 180 HTEINHADKI DILLEEEPLC YAKLKNLSAS KSEELDFFDE LEELPMSSSF LHFTRSIFSD 240 ERIPVAPS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 3e-22 | 56 | 116 | 18 | 80 | Disease resistance protein RRS1 |
5w3x_D | 3e-22 | 56 | 116 | 18 | 80 | Disease resistance protein RRS1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004494428.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT140431 | 1e-100 | BT140431.1 Medicago truncatula clone JCVI-FLMt-17K15 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004494428.1 | 0.0 | probable WRKY transcription factor 69 | ||||
TrEMBL | A0A1S2XTS3 | 0.0 | A0A1S2XTS3_CICAR; probable WRKY transcription factor 69 | ||||
STRING | XP_004494428.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9708 | 32 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34830.1 | 2e-33 | WRKY DNA-binding protein 35 |