PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004494330.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family CO-like
Protein Properties Length: 355aa    MW: 39954.4 Da    PI: 6.0233
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004494330.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.13.2e-071558340
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                     r C+ +++  + l+C+ ++  lC +C  e H+       Ht++
  XP_004494330.1 15 TRPCDYCNNSTALLYCRADSAKLCFSCDREVHSTnqlfskHTRS 58
                    578******99*********************668888888876 PP
2zf-B_box25.13.6e-0859102442
        zf-B_box   4 rkCpeHeekelqlfCedCqqllCedClleeHkg.....Htvvpl 42 
                      +C+ +++ ++++ C + ++ +C++C  e H+      H+++pl
  XP_004494330.1  59 LICDSCNDSPATILCSTESSVFCQNCDWENHNIslsspHERRPL 102
                     69*****************************6599999998875 PP
3CCT62.21.6e-21311353143
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                     R+ allRYk+K+ktR+++K+irYesRK++AesR Rv+GrF+k 
  XP_004494330.1 311 RDSALLRYKQKKKTRRYDKHIRYESRKVRAESRTRVRGRFAKI 353
                     899**************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003365.2E-141360IPR000315B-box-type zinc finger
PROSITE profilePS5011910.6371360IPR000315B-box-type zinc finger
PfamPF006435.1E-61458IPR000315B-box-type zinc finger
CDDcd000212.64E-71660No hitNo description
PROSITE profilePS5011910.29656102IPR000315B-box-type zinc finger
PfamPF006433.3E-659102IPR000315B-box-type zinc finger
CDDcd000211.15E-460102No hitNo description
SMARTSM003360.2661102IPR000315B-box-type zinc finger
PfamPF062033.1E-15311352IPR010402CCT domain
PROSITE profilePS5101714.574311353IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MGGSNKNEQE SPQKTRPCDY CNNSTALLYC RADSAKLCFS CDREVHSTNQ LFSKHTRSLI  60
CDSCNDSPAT ILCSTESSVF CQNCDWENHN ISLSSPHERR PLEGFNGCPS VNELLSIVGL  120
HDVEKKSLLL SEESVADGFL SCEIDGFSDD LFVWDAPSFV SFDDLISTSH SYSAMEVPPL  180
PKNRKAACGR HQEEILNQLR EMVKSEPLDP EEYMQPKNLS TGFEHDTKDD IIPSNEWLGE  240
SGEPVYQVVP VDTSFKAHTK EIPVKHAVPS AEEPHSHSNN GGTPSESLKS ETLSTTPRAV  300
PAPYELASQE RDSALLRYKQ KKKTRRYDKH IRYESRKVRA ESRTRVRGRF AKIEH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1319325QKKKTRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004494330.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004494328.10.0zinc finger protein CONSTANS-LIKE 13
RefseqXP_004494329.10.0zinc finger protein CONSTANS-LIKE 13
RefseqXP_004494330.10.0zinc finger protein CONSTANS-LIKE 13
TrEMBLA0A1S2XTJ80.0A0A1S2XTJ8_CICAR; zinc finger protein CONSTANS-LIKE 13
STRINGXP_004494328.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.18e-91B-box type zinc finger protein with CCT domain