PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004494259.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family NF-YA
Protein Properties Length: 333aa    MW: 36159.7 Da    PI: 9.7833
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004494259.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA96.62.8e-30164220158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     d p+YVNaKQy++I++RRq+Rak+   +kl +k rkpy+heSRh hA+rRpRg+gGrF
  XP_004494259.1 164 DGPIYVNAKQYHGIIRRRQSRAKAVLGHKL-IKRRKPYMHESRHLHAMRRPRGCGGRF 220
                     57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.7E-34162223IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.631163223IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.4E-26166220IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006165.7E-23166188IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006165.7E-23197220IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MAMQSVYLKE NEGIAHNFVG QLSSANSGAA PWWSSFGSQS LYGESGGCGQ IKSFSLEPPI  60
SVNQFGATKQ LGRGAEHLLG KEHTNHFTIF PDDFKMSADA QKPHTTISLQ SSFPDTATRY  120
ELGFTQPMIC TKYPYADQFY GLISTYGPQI PGRVMLPLNM TSDDGPIYVN AKQYHGIIRR  180
RQSRAKAVLG HKLIKRRKPY MHESRHLHAM RRPRGCGGRF LNTKKSANGD GKSGSKVHKF  240
GGQQLQCSGS QSSEVLESDV GTLNSSKETN GSSPNISGSE VTSLYSRGNF DGFAVNHLGS  300
SVHSLADMID GGRGVIMPTK WVTAAGNCCN LKA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-16166225463NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1178197RRRQSRAKAVLGHKLIKRRK
2178198RRRQSRAKAVLGHKLIKRRKP
3179198RRQSRAKAVLGHKLIKRRKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004494259.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ9182670.0JQ918267.1 Medicago truncatula nuclear transcription factor Y subunit A2 (NF-YA2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004494259.10.0nuclear transcription factor Y subunit A-10-like
RefseqXP_027188900.10.0nuclear transcription factor Y subunit A-10-like
TrEMBLA0A1S2XTJ20.0A0A1S2XTJ2_CICAR; nuclear transcription factor Y subunit A-10-like
STRINGXP_004494259.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37943464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.21e-64nuclear factor Y, subunit A10