PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004494211.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | NAC | ||||||||
Protein Properties | Length: 250aa MW: 29105.7 Da PI: 7.2513 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 139.1 | 2.8e-43 | 4 | 135 | 1 | 127 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 + pG+rF Pt+eel+++yL++ +eg++ ++ +vi+ v+iy+++P++Lp+ + + ++w+fF+kr++++ +g r++r+t++gyWkatg+ + XP_004494211.1 4 MLPGYRFYPTEEELISFYLHNMLEGDNeYKIRTVIPVVNIYDYNPSELPQisgeASMRDMEQWFFFIKRQESEVRGGRPKRVTTTGYWKATGSPN 98 579*********************9987888889***************6455422235669********************************* PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyr 127 +v+s++++ +g+k+t+vfy+grap+g+ktdW m+ey+ XP_004494211.1 99 HVYSSHNHIIGMKRTMVFYSGRAPNGKKTDWKMNEYK 135 ************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-44 | 3 | 163 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 45.739 | 4 | 163 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.6E-22 | 6 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MENMLPGYRF YPTEEELISF YLHNMLEGDN EYKIRTVIPV VNIYDYNPSE LPQISGEASM 60 RDMEQWFFFI KRQESEVRGG RPKRVTTTGY WKATGSPNHV YSSHNHIIGM KRTMVFYSGR 120 APNGKKTDWK MNEYKAIQDQ PSSSNKLAPM LRNEMSLCRV YKKSKCLRAF DRRPAPRRVT 180 NDQEFNKDST ICNHNNVQIF ATSSPDSSSS LDHGQTSNEV GEGSQMDINV DHREPLLYWE 240 HVDWFLGIEP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 8e-30 | 3 | 163 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 8e-30 | 3 | 163 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 8e-30 | 3 | 163 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 8e-30 | 3 | 163 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 9e-30 | 3 | 163 | 19 | 168 | NAC domain-containing protein 19 |
3swm_B | 9e-30 | 3 | 163 | 19 | 168 | NAC domain-containing protein 19 |
3swm_C | 9e-30 | 3 | 163 | 19 | 168 | NAC domain-containing protein 19 |
3swm_D | 9e-30 | 3 | 163 | 19 | 168 | NAC domain-containing protein 19 |
3swp_A | 9e-30 | 3 | 163 | 19 | 168 | NAC domain-containing protein 19 |
3swp_B | 9e-30 | 3 | 163 | 19 | 168 | NAC domain-containing protein 19 |
3swp_C | 9e-30 | 3 | 163 | 19 | 168 | NAC domain-containing protein 19 |
3swp_D | 9e-30 | 3 | 163 | 19 | 168 | NAC domain-containing protein 19 |
4dul_A | 8e-30 | 3 | 163 | 16 | 165 | NAC domain-containing protein 19 |
4dul_B | 8e-30 | 3 | 163 | 16 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004494211.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004494211.1 | 0.0 | NAC domain-containing protein 90 | ||||
TrEMBL | A0A1S2XTA1 | 0.0 | A0A1S2XTA1_CICAR; NAC domain-containing protein 90 | ||||
STRING | XP_004494211.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF871 | 34 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 3e-69 | NAC domain containing protein 90 |