PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004494130.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | Trihelix | ||||||||
Protein Properties | Length: 451aa MW: 52587.3 Da PI: 6.2694 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 75.6 | 7.8e-24 | 106 | 207 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgk...............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstc 79 +Wt+++v++Li a+ +++++ + ++ +kk++W++vsk m+e+g+ +sp+qC++k+++lnkr+k+++++ +k+ +++++++ XP_004494130.1 106 KWTDSMVRLLIMAVYYIGDEAGGSEgiiindkkksttgllQKKGKWKSVSKGMMEKGYYVSPQQCEDKFNDLNKRFKRVNDILGKGtACRVVENQ 200 7**************9999999876777778888999999**********************************************559****** PP trihelix 80 pyfdqle 86 +++d ++ XP_004494130.1 201 SLLDTMD 207 ***9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.4E-20 | 104 | 232 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 451 aa Download sequence Send to blast |
METNGPSSGI FPTINNGFLG LENPLKQQQQ QQQNLQNQHT LHHHQMVSYT NHHDNDQPIK 60 QNYPYSSKTN KPQQITLSDE DEPCFGAEET TSSDPKRKGS PWHRMKWTDS MVRLLIMAVY 120 YIGDEAGGSE GIIINDKKKS TTGLLQKKGK WKSVSKGMME KGYYVSPQQC EDKFNDLNKR 180 FKRVNDILGK GTACRVVENQ SLLDTMDLTP KMKEEARKLL NSKHLFFREM CAYHNSCGHG 240 SNNLQQQSSI EAQPQPQQHH QQQQKCLHSS NGMLKLKRRS GEEEEEEDED DEWEEENDSE 300 EEEEEEDELS FEGGSGSKGH HDQEDENNNN IDHIRKKTRK VSSHLMQQLS SEVMNVLQDG 360 VKSNWEKKQW MKKREVQLAE QQINYHVEAF EIEKQRLKWA KFSGNKEREI ERHKLENEGK 420 RLEIDRMVLV LRQKEIELQN TQQQQQQHSS T |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004494130.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004494130.1 | 0.0 | uncharacterized protein DDB_G0290301-like | ||||
TrEMBL | A0A1S2XUD8 | 0.0 | A0A1S2XUD8_CICAR; uncharacterized protein DDB_G0290301-like | ||||
STRING | XP_004494130.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4820 | 34 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10040.1 | 2e-72 | sequence-specific DNA binding transcription factors |