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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004494126.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 233aa MW: 27242.5 Da PI: 5.4851 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58 | 1.6e-18 | 62 | 117 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r k+ ++t++q+e Le+ F+++ +++ e++ +L+++lgL+ rq+ vWFqNrR+++k XP_004494126.1 62 REKKKRLTNNQIELLERSFQEEIKLDPERKMKLSRELGLQPRQIAVWFQNRRTRWK 117 567888*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 115.1 | 4.3e-37 | 63 | 155 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekk+rl+++q++lLE+sF+ee kL+perK++l+reLglqprq+avWFqnrR R+k+kqlE+ y+ Lk+++d +++e++ L++ev +L+ +lke XP_004494126.1 63 EKKKRLTNNQIELLERSFQEEIKLDPERKMKLSRELGLQPRQIAVWFQNRRTRWKAKQLEHLYDELKHEFDVISKEKQILQEEVLKLKGKLKE 155 69**************************************************************************************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.2E-19 | 44 | 121 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 18.139 | 59 | 119 | IPR001356 | Homeobox domain |
SMART | SM00389 | 9.8E-17 | 61 | 123 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.34E-15 | 62 | 120 | No hit | No description |
Pfam | PF00046 | 6.7E-16 | 62 | 117 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-19 | 65 | 126 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 7.9E-5 | 90 | 99 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 94 | 117 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 7.9E-5 | 99 | 115 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MDWNESSRPF IPLPESSLSF FYNYNNNPSY SGMEVSQASL GDQTQQMFPA MDEMNINGNN 60 NREKKKRLTN NQIELLERSF QEEIKLDPER KMKLSRELGL QPRQIAVWFQ NRRTRWKAKQ 120 LEHLYDELKH EFDVISKEKQ ILQEEVLKLK GKLKEQCNFR TQTQTFGGYK EMSNEETVES 180 TSEGMKCSNR PQGITSSNIQ QVAAAEGYNS SFTVEDFNSV SMPPQWPVLP YYP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 111 | 119 | RRTRWKAKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004494126.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU938527 | 5e-38 | EU938527.1 Lens culinaris tendril-less gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004494126.1 | 1e-174 | putative homeobox-leucine zipper protein ATHB-51 | ||||
Swissprot | Q9LZR0 | 4e-46 | ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51 | ||||
TrEMBL | A0A1S2XV30 | 1e-173 | A0A1S2XV30_CICAR; putative homeobox-leucine zipper protein ATHB-51 | ||||
STRING | XP_004494126.1 | 1e-173 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3394 | 34 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03790.1 | 4e-41 | homeobox 51 |
Publications ? help Back to Top | |||
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