PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

MYB

Protein Properties

Length: 251aa MW: 28379 Da PI: 6.5054

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004494064.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.6	2.2e-16	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ed +l+d+++++G+g +W t ++++g+ R++k+c++rw++yl XP_004494064.1 14 KGPWSPQEDAKLKDYIEKHGTGgNWITLPKKVGLIRCGKSCRLRWLNYL 62 79*********************************************97 PP
2	Myb_DNA-binding	35.9	1.8e-11	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g+++ Ed+++ +++ G++ W+ Ia+++ gRt++++k++w++ XP_004494064.1 69 GKFSDLEDQIICTLFASIGSR-WSIIASHLE-GRTDNDVKNYWNT 111 8999***************.*****.*********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.215	9	62	IPR017930	Myb domain
SuperFamily	SSF46689	3.47E-26	11	109	IPR009057	Homeodomain-like
SMART	SM00717	2.4E-11	13	64	IPR001005	SANT/Myb domain
Pfam	PF00249	7.8E-15	14	62	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.9E-23	15	69	IPR009057	Homeodomain-like
CDD	cd00167	8.49E-9	16	62	No hit	No description
PROSITE profile	PS51294	20.688	63	117	IPR017930	Myb domain
SMART	SM00717	6.3E-11	67	115	IPR001005	SANT/Myb domain
Pfam	PF00249	3.3E-10	69	111	IPR001005	SANT/Myb domain
CDD	cd00167	1.75E-6	70	113	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.0E-21	70	117	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MGRAPCCDKA NVKKGPWSPQ EDAKLKDYIE KHGTGGNWIT LPKKVGLIRC GKSCRLRWLN 60 YLRPNIKHGK FSDLEDQIIC TLFASIGSRW SIIASHLEGR TDNDVKNYWN TKLKKKIMAN 120 INHSIEMKAQ QITLLPYQSQ ESFTGSYSYS STSSLLSGNS STSAAQESFN IGPTEKCQLF 180 KDINVIDQEL VAKCGDINYL YNDVEDSEKL MFSNDENGLW GENTLDYGLD EINKEIISTD 240 ISSCKKYLFD D

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	1e-22	14	117	7	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269\|PubMed:16461581}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004494064.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004494064.1	0.0	transcription factor RAX2-like
Swissprot	Q9SJL7	2e-72	RAX2_ARATH; Transcription factor RAX2
TrEMBL	A0A1S2XU87	0.0	A0A1S2XU87_CICAR; transcription factor RAX2-like
STRING	XP_004494064.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF130	34	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36890.1	9e-74	MYB family protein

Publications ? help Back to Top
Guo D, et al. The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis. Plant Cell, 2015. 27(11): p. 3112-27 [PMID:26578700]